Crate syncmers

Structs

This is SIGNIFICANTLY slower than find_syncmers function. Prefer to use that instead. t is 0-based (unlike in the paper) NOTE: “By convention, ties are broken by choosing the leftmost position” NOTE: Sequence should be all upper case (or all lower case) BEFORE it gets to this point NOTE: Feed this the canonical strand

Functions

complement

Complement a sequence, primarily used with revcomp function

find_syncmers

Find syncmers from &u8 and return Vec<&u8>

find_syncmers_pos

Find positions of syncmers

is_revcomp_min

Test if the reverse complement is smaller, lexicographically, than the original sequence Syncmers should be obtained from the Canonical strand (minimum strand). Use this function for your own tests. It is not used in the Syncmer implementation.

revcomp

Reverse complement a DNA Sequence. Case preserved