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Crate survival

Crate survival

Modules§

simd_ops

Structs§

Enums§

Constants§

Functions§

aareg
active_learning_selection
advanced_calibration_metrics
adversarial_training_survival
aeq_surv: Adjudicate near ties in survival times.
agexact
aggregate_survfit: Aggregate (average) multiple survival curves.
aggregate_survfit_by_group: Average survival curves by group
aggregate_survshap
agmart
agsurv4
agsurv5
analyze_local_global
analyze_missing_pattern
andersen_gill
anderson_gill_model
anova_coxph
anova_coxph_single
assess_model_robustness
basehaz
batch_predict_survival
bayesian_bootstrap_survival
bayesian_cox
bayesian_cox_predict_survival
bayesian_model_averaging_cox
bayesian_parametric
bayesian_parametric_predict
benchmark_compute_backend
benchmark_models
blending_survival
bootstrap_conformal_survival
bootstrap_cox_ci: Compute bootstrap confidence intervals for Cox regression coefficients.
bootstrap_survreg_ci
bounded_cumulative_hazard_model
brier
brier_calibration
c_index_decomposition
calibrate_prediction_intervals
calibration
calibration_plot
calibration_plot_data
causal_forest_survival
cause_specific_cox
cause_specific_cox_all
cipoisson
cipoisson_anscombe
cipoisson_exact
clinical_utility_at_threshold
cluster: Identify clusters for robust variance estimation.
cluster_ice_curves
cluster_str: Identify clusters from string identifiers
collapse
compare_cure_models
compare_decision_curves
compare_models
compare_uno_c_indices
competing_risks_cif
componentwise_boosting
compute_ale
compute_ale_2d
compute_all_pairwise_interactions
compute_brier
compute_concordance: Compute concordance statistics for survival predictions.
compute_cv_score
compute_dice
compute_domain_distance
compute_expected_survival
compute_fairness_metrics
compute_feature_importance_decomposition
compute_friedman_h
compute_ice
compute_ipcw_weights
compute_longitudinal_iptw
compute_model_selection_criteria
compute_rcll
compute_rcll_single_time
compute_rmst
compute_shap_interactions
compute_spatial_smoothed_rates
compute_survfitkm
compute_survival_ice
compute_time_varying_ale
concordance1
conditional_reliability
conditional_survival
conformal_calibrate
conformal_calibration_plot
conformal_coverage_cv
conformal_coverage_test
conformal_predict
conformal_survival
conformal_survival_from_predictions
conformal_survival_parallel
conformal_width_analysis
conformalized_survival_distribution
contrastive_surv
copula_censoring_model
covariate_shift_conformal_survival
cox_score_residuals
coxcount1
coxcount2
coxmart
coxph_detail
cqr_conformal_survival
create_model_card
create_simple_ratetable: Create a simple rate table for testing/demonstration
crude_probability_of_death
cumulative_dynamic_auc
cumulative_dynamic_auc_core
cumulative_incidence
cv_cox_concordance
cv_survreg_loglik
cvplus_conformal_calibrate
cvplus_conformal_survival
d_calibration
days_to_date
decision_curve_analysis
deep_surv
deephit
detect_changepoints
detect_changepoints_single_series
detect_drift
detect_heterogeneity
detect_time_varying_features
dfbeta_cox
dfbeta_survreg
diffusion_survival_model
dirichlet_process_survival
distill_survival_model
double_ml_cate
double_ml_survival
doubly_robust_conformal_calibrate
doubly_robust_conformal_survival
dp_cox_regression
dp_histogram
dp_kaplan_meier
dro_survival
dynamic_auc
dynamic_brier_score
dynamic_c_index
dynamic_deephit
dynamic_prediction
dynamic_risk_prediction
elastic_net_cox
elastic_net_cox_cv
elastic_net_cox_path
ensemble_uncertainty
estimate_counterfactual_survival
estimate_transition_intensities
estimate_tv_survcaus
evaluate_robustness
excess_hazard_regression
expected_events
failure_probability
fairness_audit
fast_cox
fast_cox_cv
fast_cox_path
federated_cox
finegray
finegray_regression
fit_attention_cox
fit_cox_time
fit_deep_pamm
fit_dysurv
fit_graph_surv
fit_illness_death
fit_longitudinal_surv
fit_mamba_surv
fit_markov_msm
fit_multi_state_model
fit_multimodal_surv
fit_neural_mtlr
fit_neural_ode_surv
fit_recurrent_surv
fit_semi_markov
fit_survival_transformer
fit_temporal_fusion_transformer
fleming_harrington_test
flexible_parametric_model
forest_plot_data
fpca_survival
from_timeline: Convert timeline (wide) format to interval (long) format
functional_cox
g_computation
g_computation_survival_curves
g_estimation_aft
galee
gap_time_model
generate_adversarial_examples
generate_forest_plot_data
generate_survival_report
get_available_devices
gonen_heller_concordance
goodness_of_fit_cox
gradient_boost_survival
group_lasso_cox
group_sequential_analysis
group_variables
hazard_ratio: Compute hazard ratio between two groups.
hazard_to_reliability
horseshoe_cox
hyperparameter_search
incremental_cost_effectiveness
integrated_brier
interval_censored_regression
ipcw_auc
ipcw_kaplan_meier
ipcw_treatment_effect
is_gpu_available
is_ratetable
iv_cox
jackknife_plus_survival
joint_competing_risks
joint_frailty_model
joint_longitudinal_model
joint_model
km_plot_data
landmark_analysis
landmark_analysis_batch
landmark_cox_analysis
landmarking_analysis
leverage_cox
life_table
local_dp_mean
logrank_test: Perform log-rank test comparing survival between groups.
logrank_trend
longitudinal_dynamic_pred
lrt_test
marginal_recurrent_model
marginal_structural_model
mc_dropout_uncertainty
mean_residual_life
mediation_survival
mixture_cure_model
mnar_sensitivity_survival
model_influence_cox
mondrian_conformal_calibrate
mondrian_conformal_predict
mondrian_conformal_survival
monitor_performance
moran_i_test
multi_time_calibration
multiple_imputation_survival
neardate: Find the closest matching date/value in a reference set.
neardate_str: Find nearest date using string IDs
negative_binomial_frailty
nelson_aalen
nelson_aalen_estimator: Compute Nelson-Aalen cumulative hazard estimate.
nested_cross_validation
net_survival
network_heterogeneity_survival
network_survival_model
non_mixture_cure_model
norisk
npmle_interval
nsk: Create natural spline basis for given data.
number_needed_to_treat
one_calibration
outlier_detection_cox
parallel_cox_regression
parallel_matrix_operations
pattern_mixture_model
perform_agscore3_calculation
perform_concordance1_calculation
perform_concordance3_calculation
perform_concordance_calculation
perform_cox_regression_frailty
perform_score_calculation
permutation_importance
ph_test
power_logrank
power_survival
predict_bounded_cumulative_hazard
predict_cox
predict_hazard_spline
predict_illness_death
predict_non_mixture_survival
predict_semi_markov
predict_survreg
predict_survreg_quantile
pretrain_survival_model
promotion_time_cure_model
prune_survival_model
pseudo: Compute pseudo-values for survival analysis.
pseudo_fast: Compute pseudo-values using efficient IJ residuals
pseudo_gee_regression
publication_bias_tests
pwp_gap_time
pwp_model
pyears_by_cell
pyears_ci
qaly_calculation
qaly_comparison
qtwist_analysis
qtwist_comparison
qtwist_sensitivity
quantile_regression_intervals
query_by_committee
ratetable_date
rcll
rcll_single_time
rd_survival
relative_survival
reliability
reliability_growth
reliability_inverse
renewal_analysis
residuals_survfit
residuals_survreg
restricted_cubic_spline
ridge_cv: Select optimal ridge penalty using cross-validation
ridge_fit: Fit ridge regression for survival models.
risk_stratification
rmst: Compute Restricted Mean Survival Time (RMST).
rmst_comparison: Compare RMST between two groups.
rmst_optimal_threshold: Compute optimal RMST threshold using reduced piecewise exponential model.
robustness_analysis
roc_plot_data
royston: Compute Royston’s D statistic for a Cox model.
royston_from_model: Compute Royston’s D from model coefficients and data.
rttright: Compute redistribute-to-the-right weights for censored data.
rttright_stratified: Compute IPCW weights with stratification
sample_size_logrank
sample_size_survival
sample_size_survival_freedman
schoenfeld_residuals
score_test
secure_aggregate
sensitivity_analysis
sensitivity_bounds_survival
sequential_trial_emulation
sis_cox
smooth_schoenfeld
smoothed_calibration
sparse_boosting_cox
spatial_frailty_model
spike_slab_cox
stability_selection_cox
stacking_survival
statefig: Generate data for a state space figure.
statefig_matplotlib_code: Generate matplotlib-compatible plot code for the state figure
statefig_transition_matrix: Create transition matrix from edge list
statefig_validate: Validate state transitions against allowed patterns
strata
strata_str
stratified_kaplan_meier
subgroup_analysis
summary_pyears
super_landmark_model
super_learner_survival
surv2data: Convert timecourse data to counting process (time1, time2) format
survcheck: Check survival data for consistency.
survcheck_simple: Simplified check for standard (non-multi-state) survival data
survcondense: Condense a survival dataset by merging adjacent censored intervals
survdiff2
survexp: Compute expected survival based on population mortality.
survexp_individual: Compute individual expected survival for each subject
survexp_mn
survexp_us
survexp_usr
survfit_from_cumhaz
survfit_from_hazard
survfit_from_matrix
survfit_multistate
survfitaj
survfitaj_extended
survfitkm: Compute Kaplan-Meier survival curve estimates.
survfitkm_with_options
survival_at_times
survival_forest
survival_meta_analysis
survival_quantile
survobrien: O’Brien’s Test for Association with Survival
survreg: Fit a parametric survival regression model.
survshap
survshap_bootstrap
survshap_from_model
survsplit
survtrace
target_trial_emulation
tcut: Create factor for person-years calculations with time-dependent cutpoints.
tcut_expand: Split time intervals for person-years analysis.
td_auc
time_dependent_auc
time_dependent_auc_core
time_dependent_calibration
time_dependent_roc
time_varying_auc
time_varying_cox
tipping_point_analysis
tmerge
tmerge2
tmerge3
tmle_ate
tmle_survival
to_timeline: Convert interval data to timeline (wide) format
tracer
transfer_survival_model
turnbull_estimator
two_sided_conformal_calibrate
two_sided_conformal_predict
two_sided_conformal_survival
uno_c_index
wald_test
warranty_analysis
wei_lin_weissfeld
weighted_logrank_test
wlw_model
yates: Compute population marginal means (Yates-style adjustment).
yates_contrast: Compute population marginal means with model-based predictions.
yates_pairwise: Compute pairwise contrasts between factor levels
z_score_for_confidence