Crate strobemers_rs Copy item path Source MinStrobes Iterator for generating MinStrobes of order 2 or 3 from a DNA/RNA sequence. RandStrobes Iterator for generating RandStrobes of order 2 or 3 from a DNA/RNA sequence. StrobeError Error variants for strobemer generation and related operations. ASCII_SIZE COMPL_BASES Complement base lookup table. Maps ASCII nucleotide characters to their complementary DNA base:
A ↔ T, C ↔ G. Any other character defaults to N. DEFAULT_PRIME_NUMBER SEQ_NT4_TABLE 2-bit encoding table for nucleotide sequences. Maps ASCII characters to:
A=0, C=1, G=2, T/U=3, any other character=4 (invalid). KmerHasher complement Returns the complementary DNA/RNA base for the given ASCII byte. compute_hashes Generates k-mer hash values from the given sequence seq, using exactly one hash per k-mer. compute_min_hashes For a sliding window of width w over the given slice of hash values,
computes the index and value of the minimum hash in each window. Runs in O(N) time
by maintaining a monotonic (increasing) queue of candidates. nt4 Encodes a nucleotide ASCII byte into its 2-bit code (0‒3), or 4 for invalid. roundup64 Rounds up the given value x to the next power of two. Result Common Result type for all library operations, using StrobeError for errors.