Crate strobemers_rs 

Structs

MinStrobes

Iterator for generating MinStrobes of order 2 or 3 from a DNA/RNA sequence.

RandStrobes

Iterator for generating RandStrobes of order 2 or 3 from a DNA/RNA sequence.

Enums

StrobeError

Error variants for strobemer generation and related operations.

Constants

ASCII_SIZE

COMPL_BASES

Complement base lookup table. Maps ASCII nucleotide characters to their complementary DNA base: A ↔ T, C ↔ G. Any other character defaults to N.

DEFAULT_PRIME_NUMBER

SEQ_NT4_TABLE

2-bit encoding table for nucleotide sequences. Maps ASCII characters to: A=0, C=1, G=2, T/U=3, any other character=4 (invalid).

Traits

KmerHasher

Functions

complement

Returns the complementary DNA/RNA base for the given ASCII byte.

compute_min_hashes

For a sliding window of width w over the given slice of hash values, computes the index and value of the minimum hash in each window.

nt4

Encodes a nucleotide ASCII byte into its 2-bit code (0‒3), or 4 for invalid.

roundup64

Rounds up the given value x to the next power of two.

Type Aliases

Result

Common Result type for all library operations, using StrobeError for errors.