Module builder 

Builder module for constructing SSHash dictionaries

This module implements the multi-step build pipeline:

1. Parse and encode input strings (FASTA/FASTQ)
2. Compute minimizer tuples for each k-mer
3. Merge and sort minimizer tuples
4. Build minimizers control map (MPHF)
5. Hash minimizers with MPHF IDs
6. Build sparse and skew index
7. Finalize dictionary structure

Re-exports

pub use cf_seg::CfSegData;

pub use cf_seg::parse_cf_seg;

pub use config::BuildConfiguration;

pub use minimizer_tuples::MinimizerTuple;

pub use dictionary_builder::DictionaryBuilder;

pub use dictionary_builder::BucketMetadata;

pub use crate::kmer::Kmer;

Modules

buckets

Bucket classification and statistics

cf_seg

Parser for cuttlefish .cf_seg segment files

config

Build configuration for SSHash dictionary construction

dictionary_builder

Dictionary builder orchestration

encode

String encoding module for building the Spectrum-Preserving String Set

external_sort

External sorting for minimizer tuples

minimizer_tuples

Minimizer tuple computation for the build pipeline

parse

FASTA/FASTQ parsing with automatic decompression