Module bioinformatics_kernels 

Bioinformatics Kernel Methods

This module implements kernel methods for bioinformatics applications, including genomic analysis, protein structure, phylogenetic analysis, metabolic networks, and multi-omics integration.

References

• Leslie et al. (2004): “Mismatch string kernels for discriminative protein classification”
• Shawe-Taylor & Cristianini (2004): “Kernel Methods for Pattern Analysis”
• Vert et al. (2004): “A primer on kernel methods in computational biology”
• Borgwardt et al. (2005): “Protein function prediction via graph kernels”

Structs

GenomicKernel

Kernel method for genomic sequence analysis using k-mer features

MetabolicNetworkKernel

Kernel method for metabolic network and pathway analysis

MultiOmicsKernel

Kernel method for multi-omics data integration

PhylogeneticKernel

Kernel method for phylogenetic analysis using evolutionary distances

ProteinKernel

Kernel method for protein sequence analysis with physicochemical properties

Enums

OmicsIntegrationMethod

Multi-omics integration method