1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
use std::fmt::Debug;
use sigalign_core::aligner::AllocationStrategy;

#[derive(Clone)]
pub struct LinearStrategy;
impl AllocationStrategy for LinearStrategy {
    fn new() -> Self {
        Self
    }
    #[inline(always)]
    fn initial_query_len(&self) -> u32 {
        200
    }
    #[inline(always)]
    fn enlarge_query_len(&self, needed_query_len: u32) -> u32 {
        needed_query_len + 200
    }
}
impl Debug for LinearStrategy {
    fn fmt(&self, f: &mut std::fmt::Formatter<'_>) -> std::fmt::Result {
        write!(f, "LinearStrategy")
    }
}

#[derive(Clone)]
pub struct DoublingStrategy;
impl AllocationStrategy for DoublingStrategy {
    fn new() -> Self {
        Self
    }
    #[inline(always)]
    fn initial_query_len(&self) -> u32 {
        200
    }
    #[inline(always)]
    fn enlarge_query_len(&self, needed_query_len: u32) -> u32 {
        let leading_zeros = needed_query_len.leading_zeros();
        1 << (32 - leading_zeros)
    }
}
impl Debug for DoublingStrategy {
    fn fmt(&self, f: &mut std::fmt::Formatter<'_>) -> std::fmt::Result {
        write!(f, "DoublingStrategy")
    }
}