Crate seqtable 

Re-exports

pub use output::OutputFormat;

pub use output::SequenceData;

pub use output::SequenceRecord;

Modules

output

Structs

DualSeqCounts

Dual HashMap: PackedDna keys for ≤160bp ACGT-only, Vec fallback for the rest.

PackedDna

2-bit packed DNA key: up to 160bp ACGT-only sequences in 48 bytes. data[0..5] stores 2-bit encoded bases (LSB-first), len stores sequence length.

Constants

FASTQ_EXTENSIONS

Functions

calculate_chunk_size

count_sequences

count_sequences_from_reader

Count sequences from stdin or any reader.

count_sequences_sequential

format_count

pack_dna

Pack a DNA sequence (≤160bp, ACGT-only) into a PackedDna. Returns None for sequences >160bp or containing non-ACGT bases.

prepare_records

unpack_dna_into

Unpack a PackedDna key into an existing buffer (avoids allocation).

validate_fastq