Module fastq 

Efficient FASTQ reading and writing

Structs

ErrorPosition

OwnedRecord

A FASTQ record that ownes its data (requires allocations)

Position

Holds line number and byte offset of a FASTQ record

Reader

FASTQ parser.

RecordSet

Set of FASTQ records that owns it’s buffer and knows the positions of each record.

RecordSetIter

Iterator over record sets

RecordsIntoIter

Iterator of OwnedRecord that owns the underlying reader

RecordsIter

Borrowed iterator of OwnedRecord

RefRecord

A FASTQ record that borrows data from a buffer

Enums

Error

FASTQ parsing error

Traits

Record

FASTQ record trait implemented by both RefRecord and OwnedRecord

Functions

write_parts

Helper function for writing data (not necessarily stored in a Record instance) to the FASTQ format. The ID and description parts of the header are supplied separately instead of a whole header line

write_to

Helper function for writing data (not necessarily stored in a Record instance) to the FASTQ format