List of all items

Structs

• ConformerConfig
• ConformerResult
• distgeom::embedding::MinstdRand
• distgeom::embedding::Mt19937
• distgeom::validation::TetrahedralCenter
• forcefield::bounds_ff::ChiralSet
• forcefield::bounds_ff::EmbedTorsion
• forcefield::dg_terms::ChiralViolation
• forcefield::dg_terms::DistanceViolation
• forcefield::energy::FFParams
• forcefield::etkdg_3d::AngleConstraint
• forcefield::etkdg_3d::DistConstraint
• forcefield::etkdg_3d::Etkdg3DFF
• forcefield::etkdg_3d::M6TorsionContrib
• forcefield::etkdg_3d::UFFInversionContrib
• forcefield::etkdg_lite::M6Params
• forcefield::mmff94::Mmff94BufferedVanDerWaals
• forcefield::params::UffAtomParams
• forcefield::traits::MolecularForceField
• forcefield::uff::UffAngleBend
• forcefield::uff::UffHarmonicBondStretch
• forcefield::uff::UffInversion
• forcefield::uff::UffLennardJones
• forcefield::uff::UffTorsion
• graph::Atom
• graph::Bond
• graph::Molecule
• graph::NodeIndex
• optimization::bfgs::RustBfgsEngine
• smarts::SmartsAtom
• smarts::SmartsBond
• smarts::SmartsPattern
• smiles::SmilesParser

Enums

• graph::BondOrder
• graph::BondStereo
• graph::ChiralType
• graph::Hybridization
• smarts::AtomQuery
• smarts::BondQuery

Traits

• distgeom::embedding::DistGeomRng
• forcefield::traits::ForceFieldContribution

Functions

• conformer::compute_total_bounds_energy_f64
• conformer::generate_3d_conformer
• conformer::generate_3d_conformer_best_of_k
• conformer::generate_3d_conformer_from_smiles
• conformer::generate_3d_conformer_with_torsions
• distgeom::bounds::calculate_bounds_matrix
• distgeom::bounds::calculate_bounds_matrix_opts
• distgeom::bounds::get_bond_length
• distgeom::bounds::smooth_bounds_matrix
• distgeom::bounds::triangle_smooth
• distgeom::bounds::triangle_smooth_tol
• distgeom::chirality::calc_chiral_volume
• distgeom::chirality::calc_chiral_volume_f64
• distgeom::chirality::identify_chiral_sets
• distgeom::embedding::compute_initial_coords_nalgebra
• distgeom::embedding::compute_initial_coords_nalgebra_f64
• distgeom::embedding::compute_initial_coords_rdkit
• distgeom::embedding::compute_metric_matrix
• distgeom::embedding::generate_3d_coordinates
• distgeom::embedding::generate_nd_coordinates
• distgeom::embedding::generate_smart_coordinates
• distgeom::embedding::pick_etkdg_distances
• distgeom::embedding::pick_random_distances
• distgeom::embedding::pick_rdkit_distances
• distgeom::embedding::power_eigen_solver
• distgeom::validation::check_chiral_centers
• distgeom::validation::check_double_bond_geometry
• distgeom::validation::check_planarity
• distgeom::validation::check_tetrahedral_centers
• distgeom::validation::find_sssr_pub
• distgeom::validation::identify_tetrahedral_centers
• embed
• embed_batch
• etkdg::calculate_dihedral_angle
• etkdg::calculate_torsion_penalty
• forcefield::atom_typer::assign_uff_type
• forcefield::atom_typer::is_atom_aromatic
• forcefield::bounds_ff::bfgs::minimize_bfgs_rdkit
• forcefield::bounds_ff::energy::bounds_violation_energy
• forcefield::bounds_ff::energy::bounds_violation_energy_basin
• forcefield::bounds_ff::energy::bounds_violation_gradient
• forcefield::bounds_ff::energy::bounds_violation_gradient_basin
• forcefield::bounds_ff::energy::chiral_violation_energy
• forcefield::bounds_ff::energy::chiral_violation_energy_f64
• forcefield::bounds_ff::energy::chiral_violation_gradient
• forcefield::bounds_ff::energy::chiral_violation_gradient_f64
• forcefield::bounds_ff::energy::collect_embed_torsions
• forcefield::bounds_ff::lbfgs::minimize_bounds_lbfgs
• forcefield::bounds_ff::lbfgs::minimize_bounds_lbfgs_ex
• forcefield::bounds_ff::lbfgs::minimize_bounds_lbfgs_full
• forcefield::bounds_ff::lbfgs::minimize_bounds_with_torsions
• forcefield::bounds_ff::lbfgs::minimize_embedding_lbfgs
• forcefield::builder::build_uff_force_field
• forcefield::energy::angle_bend_energy
• forcefield::energy::bond_stretch_energy
• forcefield::energy::bounds_energy
• forcefield::energy::calculate_total_energy
• forcefield::energy::chirality_energy
• forcefield::energy::distance_constraint_energy
• forcefield::energy::oop_energy
• forcefield::energy::torsion_params
• forcefield::energy::torsional_energy
• forcefield::energy::uff_vdw_params
• forcefield::energy::vdw_energy
• forcefield::etkdg_3d::builder::build_etkdg_3d_ff
• forcefield::etkdg_3d::builder::build_etkdg_3d_ff_with_torsions
• forcefield::etkdg_3d::energy::etkdg_3d_energy
• forcefield::etkdg_3d::energy::etkdg_3d_energy_f64
• forcefield::etkdg_3d::energy::planarity_check_energy
• forcefield::etkdg_3d::energy::planarity_check_energy_f64
• forcefield::etkdg_3d::energy::uff_inversion_energy_only
• forcefield::etkdg_3d::gradient::etkdg_3d_gradient
• forcefield::etkdg_3d::gradient::etkdg_3d_gradient_f64
• forcefield::etkdg_3d::optimizer::correct_torsion_angles
• forcefield::etkdg_3d::optimizer::minimize_etkdg_3d
• forcefield::etkdg_3d::optimizer::minimize_etkdg_3d_bfgs
• forcefield::etkdg_3d::optimizer::minimize_etkdg_3d_with_ff
• forcefield::etkdg_lite::calc_torsion_energy_m6
• forcefield::etkdg_lite::calc_torsion_grad_m6
• forcefield::etkdg_lite::infer_etkdg_parameters
• forcefield::gradients::analytical_grad_angle
• forcefield::gradients::analytical_grad_bond
• forcefield::gradients::analytical_grad_bounds
• forcefield::gradients::analytical_grad_distance_constraint
• forcefield::gradients::analytical_grad_oop
• forcefield::gradients::analytical_grad_torsion
• forcefield::gradients::compute_analytical_gradient
• forcefield::minimizer::calculate_rmsd_kabsch
• forcefield::minimizer::minimize_energy_lbfgs
• forcefield::params::get_uff_angle_force_constant
• forcefield::params::get_uff_bond_force_constant
• forcefield::params::get_uff_bond_length
• forcefield::params::get_uff_params
• forcefield::params::get_uff_torsion_params
• forcefield::torsion_scan::optimize_torsions_bounds
• forcefield::torsion_scan::optimize_torsions_greedy
• forcefield::torsion_scan::snap_torsions_to_preferred
• graph::atom_in_ring
• graph::bond_in_ring_of_size
• graph::get_corrected_ideal_angle
• graph::get_covalent_radius
• graph::get_ideal_angle
• graph::get_vdw_radius
• graph::min_path_excluding
• graph::min_path_excluding2
• parse
• smarts::parse_smarts
• smarts::substruct_match
• smarts::torsion_matcher::match_experimental_torsions
• version

Constants

• distgeom::validation::MAX_MINIMIZED_E_PER_ATOM
• smarts::torsion_data::TORSION_PREFS_MACROCYCLES
• smarts::torsion_data::TORSION_PREFS_SMALL_RINGS
• smarts::torsion_data::TORSION_PREFS_V2