Struct sce::SingleCellExperiment

pub struct SingleCellExperiment<T: MatrixValueTrait>where
    for<'n> Displayable<&'n T>: Display,{ /* private fields */ }

Implementations

impl<T: MatrixValueTrait> SingleCellExperiment<T>where for<'n> Displayable<&'n T>: Display,

pub fn cols(&self) -> usize

pub fn rows(&self) -> usize

pub fn shape(&self) -> (usize, usize)

pub fn nnz(&self) -> usize

pub fn row_names(&self) -> &Vec<String>

pub fn get_row_name(&self, index: usize) -> Option<&String>

pub fn col_names(&self) -> &Vec<String>

pub fn counts(&self) -> &CsMat<T>

pub fn transpose_into(self) -> SingleCellExperiment<T>

pub fn from_csr( counts: CsMat<T>, rows: Vec<String>, cols: Vec<String> ) -> Result<SingleCellExperiment<T>, String>

pub fn from_csv( file_path: &str, rows: Vec<String>, cols: Vec<String> ) -> Result<SingleCellExperiment<T>, Box<dyn Error>>where T: FromStr + Num + Clone,

pub fn to_mtx(&self, file_path: &str) -> Result<(), Box<dyn Error>>where T: Display + Copy + PrimitiveKind,

pub fn to_csv(&self, file_path: &str) -> Result<(), Box<dyn Error>>where T: Copy + Zero + Display,

impl<T> SingleCellExperiment<T>where T: Neg<Output = T> + MatrixValueTrait, for<'n> Displayable<&'n T>: Display,

pub fn from_mtx( file_path: &str, rows: Vec<String>, cols: Vec<String> ) -> Result<SingleCellExperiment<T>, Box<dyn Error>>where T: Clone + Num + NumCast + Neg<Output = T>,

pub fn from_tenx_v2( cr_out: PathBuf ) -> Result<SingleCellExperiment<T>, Box<dyn Error>>where T: Copy + Num + NumCast,

pub fn from_tenx_v3( cr_out: PathBuf ) -> Result<SingleCellExperiment<T>, Box<dyn Error>>where T: Copy + Num + NumCast,

impl SingleCellExperiment<f32>

pub fn from_eds( file_path: &str, rows: Vec<String>, cols: Vec<String> ) -> Result<SingleCellExperiment<f32>, Box<dyn Error>>

pub fn to_eds(&self, file_path: &str) -> Result<(), Box<dyn Error>>

pub fn from_alevin( alv_out: PathBuf ) -> Result<SingleCellExperiment<f32>, Box<dyn Error>>

pub fn from_mat_file_names( file_names: MatFileNames, is_features_compressed: bool, matrix_kind: MatrixKind ) -> Result<SingleCellExperiment<f32>, Box<dyn Error>>

Trait Implementations

impl<T: MatrixValueTrait> Debug for SingleCellExperiment<T>where for<'n> Displayable<&'n T>: Display,

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl<'a, T: MatrixValueTrait> IntoIterator for &'a SingleCellExperiment<T>where for<'n> Displayable<&'n T>: Display,

type Item = SingleCellExperimentRow<'a, T>

The type of the elements being iterated over.

type IntoIter = SingleCellExperimentIntoIterator<'a, T>

Which kind of iterator are we turning this into?

fn into_iter(self) -> Self::IntoIter

Creates an iterator from a value.

impl<T: PartialEq + MatrixValueTrait> PartialEq<SingleCellExperiment<T>> for SingleCellExperiment<T>where for<'n> Displayable<&'n T>: Display,

fn eq(&self, other: &SingleCellExperiment<T>) -> bool

This method tests for self and other values to be equal, and is used by ==.

fn ne(&self, other: &Rhs) -> bool

This method tests for !=. The default implementation is almost always sufficient, and should not be overridden without very good reason.

impl<T: MatrixValueTrait> StructuralPartialEq for SingleCellExperiment<T>where for<'n> Displayable<&'n T>: Display,