Crate sbol_ontology 

Offline ontology facts for SBOL validation.

sbol-ontology embeds a compact, SBOL-specific fact snapshot derived from canonical ontology sources. It does not fetch network resources at runtime. The bundled Ontology accepts common SBOL document IRIs, OBO PURLs, and compact IDs, then exposes branch membership, conflict, and compatibility queries used by the sbol validator.

Extension snapshots (e.g. NCIT) can be loaded from a TSV that follows the same column schema as the bundled file. Compose them with the bundled snapshot through OntologyRegistry.

Re-exports

pub use cache::BranchRoot;

pub use cache::BuildError;

pub use cache::InstallError;

pub use cache::InstalledOntology;

pub use cache::KnownOntology;

pub use cache::OntologyCache;

pub use cache::OntologyDescriptor;

pub use cache::SourceFormat;

pub use cache::VerifyError;

Modules

cache

On-disk cache of ontology extension snapshots.

download

HTTP download helper shared by the bundled-snapshot bootstrap binary and the runtime cache.

parser

Low-level OBO and RDF/XML parsers used by the bundled snapshot generator and the runtime extension cache.

Structs

Ontology

Offline ontology query surface used by SBOL validation.

OntologyProvenance

Provenance for one upstream ontology source.

OntologyRegistry

A read-only view that layers zero-or-more extension snapshots on top of the bundled Ontology.

Enums

ComponentTypeFamily

Broad family for SBOL Component type terms.

OntologyNamespace

Ontology namespace represented by a bundled or extension term.

SequenceEncodingFamily

Broad family for SBOL Sequence encoding terms.

TermRole

SBOL-facing role assigned to a bundled ontology term.

Constants

TSV_FORMAT_VERSION

Current TSV format version. Snapshots that do not carry this version in a # format_version: N header line are rejected at load time.

Functions

normalize_term_id

Returns the compact ontology ID for a supported IRI, PURL, or compact ID.