Crate sbol_fasta 

Convert FASTA records to SBOL 3 documents.

FASTA is the lowest-common-denominator sequence exchange format — NCBI BLAST, the UniProt downloads, every genome project, and most bioinformatics tools either emit or accept it. This crate lets sbol-rs ingest that data with no external dependencies.

Each >header record becomes one sbol::Component paired with one sbol::Sequence. The component’s biological type (SBO_DNA / SBO_RNA / SBO_PROTEIN) and the sequence’s EDAM encoding are auto-detected from the alphabet of the sequence itself — the caller can override the detection with FastaImporter::with_alphabet when the data is ambiguous (e.g. a very short DNA-looking sequence that’s actually a protein).

use sbol_fasta::FastaImporter;

let (document, report) = FastaImporter::new("https://example.org/lab")?
    .read_path("genome.fasta")?;
document.check()?;
println!("{} component(s), {} sequence(s)", report.components, report.sequences);

FASTA carries no feature annotations — what you get back is a Component with no SequenceFeatures. If you need annotated data, reach for sbol-genbank instead.

Structs

FastaImporter

Imports FASTA records and emits SBOL 3 Documents.

ImportReport

Tally of what a FastaImporter run produced.

Enums

Alphabet

Biological type of a FASTA sequence.

ImportError

Fatal errors from FastaImporter.

ImportWarning

Non-fatal issues encountered while importing FASTA.