Module rustyms::identifications

source ·
Expand description

Read in the annotations from peptide identification sources

Structs

  • FastaData
    A single parsed line of a fasta file
  • IdentifiedPeptide
    A peptide that is identified by a de novo or database matching program
  • IdentifiedPeptideIter
    An iterator returning parsed identified peptides
  • NovorData
    A single parsed Novor line
  • NovorFormat
    The file format for any peaks format, determining the existence and location of all possible columns
  • OpairData
    A single parsed line of an Opair file
  • OpairFormat
    The file format for any opair format, determining the existence and location of all possible columns
  • PeaksData
    A single parsed line of a peaks file
  • PeaksFormat
    The file format for any peaks format, determining the existence and location of all possible columns
  • PeaksId
    The scans identifier for a peaks identification

Enums

Constants

  • AB
    Version Ab of PEAKS export
  • NEW_DENOVO
    denovo: # id, scanNum, RT, mz(data), z, pepMass(denovo), err(data-denovo), ppm(1e6*err/(mz*z)), score, peptide, aaScore,
  • NEW_PSM
    PSM: #id, spectraId, scanNum, RT, mz, z, pepMass, err, ppm, score, protein, start, length, origin, peptide, noPTMPeptide, aac, allProteins
  • OLD
    An older version of a PEAKS export
  • OLD_DENOVO
    The older supported format for denovo.csv files from Novor
  • OLD_PSM
    The older supported format for psms.csv files from Novor
  • O_PAIR
    The only supported format for Opair data
  • X
    Version X of PEAKS export (made for build 31 january 2019)
  • XI
    Version 11 of PEAKS export
  • XPLUS
    Version X+ of PEAKS export (made for build 20 november 2019)

Traits

Type Aliases