List of all items

Structs

• bamstats::Stats
• bed::Region
• cli::Cli
• nucfreq::NucList
• nucfreq::Nucfreq
• paf::Paf
• paf::PafRecord
• suns::Genome

Enums

• cli::Commands
• liftover::Error
• paf::Error

Traits

• annotate::IntervalTreeExt

Functions

• annotate::interval_tree_from_bed_file
• bamstats::add_stats_from_cigar
• bamstats::cigar_stats
• bamstats::print_cigar_stats
• bamstats::print_cigar_stats_header
• bamstats::stats_from_paf
• bed::get_overlap
• bed::has_overlap
• bed::parse_bed
• bed::parse_bed_rec
• bed::parse_bed_record
• bed::parse_region
• bed::split_region
• cli::make_cli_app
• cli::make_cli_parse
• fastx::run_split_fastx
• getfasta::fetch_fasta
• getfasta::get_fasta
• liftover::break_paf_on_indels
• liftover::trim_helper
• liftover::trim_paf_by_rgns
• liftover::trim_paf_rec_to_rgn
• myio::reader
• myio::writer
• nucfreq::nucfreq
• nucfreq::print_nucfreq
• nucfreq::print_nucfreq_header
• nucfreq::region_nucfreq
• nucfreq::small_nucfreq
• paf::cigar_from_str
• paf::cigar_swap_target_query
• paf::consumes_query
• paf::consumes_reference
• paf::cs_to_cigar
• paf::is_match
• paf::make_fake_paf_rec
• paf::paf_swap_query_and_target
• paf::update_cigar_opt_len
• suns::pretty_interval_print
• suns::validate_suns
• trim_overlap::trim_overlapping_pafs