Crate rustkmer 

RustKmer Library

High-performance k-mer counting library for genomic data analysis.

This library provides core functionality for counting k-mers in DNA sequences, with support for memory-efficient storage and multiple output formats.

Examples

use rustkmer::KmerCounter;

// Create a k-mer counter for 21-mers
let counter = KmerCounter::new(21, true, 1000000, 4).unwrap();
counter.count_file("genome.fa")?;
let counts = counter.get_all_counts();

Re-exports

pub use error::KmerError;

pub use error::ProcessingError;

pub use error::ProcessingResult;

pub use hash::KmerCounter;

Modules

cli

Command-line interface module

config

Configuration Management Module

core

Core functionality modules for RustKmer

database

Database functionality for k-mer storage and querying

error

Error types for rustkmer

fuzzy

Fuzzy Query Module

hash

Hash table and counting functionality

io

Input/output operations

kmer

K-mer representation and operations

memory

Memory Management Module

output

Output formatting and serialization

Macros

if_profiling

Convenience macro for conditional monitoring code

time_operation

Convenience macro for timing operations