Crate rustalign_io 

RustAlign I/O - File parsing and formatting

This crate handles FASTA, FASTQ, and SAM file formats.

Re-exports

pub use fasta::FastaReader;

pub use fasta::FastaRecord;

pub use fastq::FastqReader;

pub use fastq::FastqRecord;

pub use mmap::MmapFile;

pub use mmap::MmapFileBuilder;

pub use sam::SamConfig;

pub use sam::SamOpt;

pub use sam::SamRecord;

pub use sam::SamWriter;

Modules

fasta

FASTA file parsing

fastq

FASTQ file parsing

mmap

Memory-mapped file support for FM-index loading

sam

SAM format output

Enums

Nuc

A nucleotide (A, C, G, T, or N)

Functions

encode_qual

Encode quality scores to Phred+33

parse_dna

Parse a DNA sequence from a string

parse_qual

Parse a quality string from Phred+33 encoding