Crate rustalign_cli 

RustAlign CLI - Command-line interface

This crate provides the main executables for RustAlign:

• rustalign align: Align reads to a reference
• rustalign build: Build an FM-index from a reference
• rustalign inspect: Inspect and query an index

Legacy binaries (still available):

• rustalign-align: Align reads to a reference
• rustalign-build: Build an FM-index from a reference
• rustalign-inspect: Inspect and query an index

Re-exports

pub use align::AlignOptions;

pub use align::run as run_align;

pub use align::run_with_options as run_align_with_options;

pub use build::BuildOptions;

pub use build::run as run_build;

pub use build::run_with_options as run_build_with_options;

pub use inspect::InspectOptions;

pub use inspect::run as run_inspect;

pub use inspect::run_with_options as run_inspect_with_options;

Modules

align

ferroux-align - Main alignment tool

build

rustalign-build - Build FM-index from reference

inspect

rustalign-inspect - Inspect and query FM-index