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use crate::atdf_types::AtdfRecord;
use crate::stdf_error::StdfError;
use crate::stdf_file::{rewind_stream_position, StdfStream};
use crate::stdf_types::{bytes_to_string, CompressType};
use bzip2::bufread::BzDecoder;
use flate2::bufread::GzDecoder;
use std::io::{BufRead, BufReader, Seek};
use std::{fs, mem, str};
pub struct AtdfReader<R> {
delimiter: char,
scale_flag: bool,
stream: StdfStream<R>,
}
pub struct AtdfRecordIter<'a, R> {
inner: &'a mut AtdfReader<R>,
incomplete_rec: String,
}
impl AtdfReader<BufReader<fs::File>> {
#[inline(always)]
pub fn new(path: &str) -> Result<Self, StdfError> {
let compress_type = if path.ends_with(".gz") {
CompressType::GzipCompressed
} else if path.ends_with(".bz2") {
CompressType::BzipCompressed
} else if path.ends_with(".zip") {
CompressType::ZipCompressed
} else {
CompressType::Uncompressed
};
let fp = fs::OpenOptions::new().read(true).open(path)?;
let br = BufReader::with_capacity(2 << 20, fp);
AtdfReader::from(br, &compress_type)
}
}
impl<R: BufRead + Seek> AtdfReader<R> {
#[inline(always)]
pub fn from(in_stream: R, compress_type: &CompressType) -> Result<Self, StdfError> {
let mut stream = match compress_type {
CompressType::GzipCompressed => StdfStream::Gz(GzDecoder::new(in_stream)),
CompressType::BzipCompressed => StdfStream::Bz(BzDecoder::new(in_stream)),
_ => StdfStream::Binary(in_stream),
};
let mut far_bytes = vec![];
stream.read_until(b'\n', &mut far_bytes)?;
let far_str = bytes_to_string(&far_bytes);
if !far_str.starts_with("FAR:A") || far_bytes.len() < 9 {
return Err(StdfError {
code: 6,
msg: format!(
"FAR record pattern 'FAR:A' not detected or required fields missing, found {}",
far_str
),
});
}
let delimiter = far_bytes[5] as char;
let scale_flag = {
let far_str_vec: Vec<_> = far_str.split(delimiter).collect();
if far_str_vec.len() > 3 {
far_str_vec[3] == "S"
} else {
false
}
};
stream = rewind_stream_position(stream)?;
Ok(AtdfReader {
delimiter,
scale_flag,
stream,
})
}
#[inline(always)]
pub fn get_record_iter(&mut self) -> AtdfRecordIter<R> {
AtdfRecordIter {
inner: self,
incomplete_rec: String::new(),
}
}
}
impl<R: BufRead + Seek> Iterator for AtdfRecordIter<'_, R> {
type Item = AtdfRecord;
#[inline(always)]
fn next(&mut self) -> Option<Self::Item> {
loop {
let mut tmp_buf = Vec::with_capacity(127);
let eof = match self.inner.stream.read_until(b'\n', &mut tmp_buf) {
Ok(n) => n == 0,
Err(e) => {
println!("Error when reading ATDF file => {}", e);
return None;
}
};
let tmp_line = match str::from_utf8(&tmp_buf) {
Ok(s) => s,
Err(_) => {
println!("String error: ATDF should only contains ascii symbols, ");
return None;
}
};
if !tmp_line.is_empty() && tmp_line.starts_with(' ') {
self.incomplete_rec.push_str(str_trim(tmp_line));
continue;
}
let clean_line = str_trim(tmp_line);
if !eof && clean_line.is_empty() {
continue;
}
let mut complete_rec = String::from(clean_line);
mem::swap(&mut self.incomplete_rec, &mut complete_rec);
if eof && complete_rec.is_empty() {
return None;
} else if complete_rec.is_empty() {
continue;
}
return match AtdfRecord::from_atdf_string(
&complete_rec,
self.inner.delimiter,
self.inner.scale_flag,
) {
Ok(atdf_rec) => Some(atdf_rec),
Err(e) => {
println!("{}", e);
None
}
};
}
}
}
#[inline(always)]
pub(crate) fn str_trim(input: &str) -> &str {
let no_pre_space = input.strip_prefix(' ').unwrap_or(input);
no_pre_space
.strip_suffix("\r\n")
.or_else(|| input.strip_suffix('\n'))
.unwrap_or(no_pre_space)
}