Module rust_htslib::htslib

source · [−]

Expand description

Re-export hts-sys htslib bindings

Structs

__BindgenBitfieldUnit

__locale_struct

__pthread_internal_list

_bcf_sr_regions_t

cram_block_compression_hdr

cram_block_slice_hdr

htsFormat__bindgen_ty_1

hts_itr_t__bindgen_ty_1

hts_md5_context

hts_pair64_max_t

hts_tpool_process

hts_tpool_result

pthread_cond_t__bindgen_ty_1

pthread_mutex_t___pthread_mutex_s

pthread_rwlock_t__bindgen_ty_1

wait__bindgen_ty_1

wait__bindgen_ty_2

Constants

AIO_PRIO_DELTA_MAX

BAM_CIGAR_SHIFT

BAM_FPROPER_PAIR

BAM_FSUPPLEMENTARY

BAM_USER_OWNS_DATA

BAM_USER_OWNS_STRUCT

BCF_ERR_CTG_INVALID

BCF_ERR_CTG_UNDEF

BCF_ERR_TAG_INVALID

BCF_ERR_TAG_UNDEF

BCF_MAX_BT_INT8

BCF_MAX_BT_INT16

BCF_MAX_BT_INT32

BCF_MIN_BT_INT8

BCF_MIN_BT_INT16

BCF_MIN_BT_INT32

BCF_SR_PAIR_ANY

BCF_SR_PAIR_BOTH

BCF_SR_PAIR_BOTH_REF

BCF_SR_PAIR_EXACT

BCF_SR_PAIR_INDELS

BCF_SR_PAIR_INDEL_REF

BCF_SR_PAIR_SNPS

BCF_SR_PAIR_SNP_REF

BCF_SR_PAIR_SOME

BGZF_BLOCK_SIZE

BGZF_ERR_HEADER

BGZF_ERR_MISUSE

BGZF_MAX_BLOCK_SIZE

CHARCLASS_NAME_MAX

COLLAPSE_INDELS

COLL_WEIGHTS_MAX

ENOTRECOVERABLE

EPROTONOSUPPORT

ESOCKTNOSUPPORT

HAVE___BUILTIN_CLZ

HTS_ALLOW_UNALIGNED

HTS_IDX_SAVE_REMOTE

HTS_IDX_SILENT_FAIL

HTS_PARSE_ONE_COORD

HTS_PARSE_THOUSANDS_SEP

HTS_PATH_SEPARATOR_CHAR

HTS_PATH_SEPARATOR_STR

HTS_RESIZE_CLEAR

INT_LEAST16_MAX

INT_LEAST16_MIN

INT_LEAST32_MAX

INT_LEAST32_MIN

PTHREAD_DESTRUCTOR_ITERATIONS

PTHREAD_KEYS_MAX

PTHREAD_STACK_MIN

SAM_FORMAT_VERSION

UINT_FAST16_MAX

UINT_FAST32_MAX

UINT_LEAST8_MAX

UINT_LEAST16_MAX

UINT_LEAST32_MAX

_BITS_BYTESWAP_H

_BITS_POSIX1_LIM_H

_BITS_POSIX2_LIM_H

_BITS_PTHREADTYPES_H

_BITS_TYPESIZES_H

_G_HAVE_IO_FILE_OPEN

_G_HAVE_IO_GETLINE_INFO

_G_HAVE_LONG_DOUBLE_IO

_G_HAVE_PRINTF_FP

_G_HAVE_SYS_CDEFS

_G_HAVE_SYS_WAIT

_G_IO_IO_FILE_VERSION

_G_NAMES_HAVE_UNDERSCORE

_G_NEED_STDARG_H

_G_USING_THUNKS

_G_VTABLE_LABEL_HAS_LENGTH

_G_VTABLE_LABEL_PREFIX

_IO_CURRENTLY_PUTTING

_IO_DELETE_DONT_CLOSE

_IO_FLAGS2_MMAP

_IO_FLAGS2_NOTCANCEL

_IO_FLAGS2_USER_WBUF

_IO_HAVE_SYS_WAIT

_IO_IS_APPENDING

_IO_TIED_PUT_GET

_IO_UNIFIED_JUMPTABLES

_LIBC_LIMITS_H_

_OLD_STDIO_MAGIC

_POSIX2_BC_BASE_MAX

_POSIX2_BC_DIM_MAX

_POSIX2_BC_SCALE_MAX

_POSIX2_BC_STRING_MAX

_POSIX2_CHARCLASS_NAME_MAX

_POSIX2_COLL_WEIGHTS_MAX

_POSIX2_EXPR_NEST_MAX

_POSIX2_LINE_MAX

_POSIX2_RE_DUP_MAX

_POSIX_AIO_LISTIO_MAX

_POSIX_CHILD_MAX

_POSIX_CLOCKRES_MIN

_POSIX_C_SOURCE

_POSIX_DELAYTIMER_MAX

_POSIX_HOST_NAME_MAX

_POSIX_LINK_MAX

_POSIX_LOGIN_NAME_MAX

_POSIX_MAX_CANON

_POSIX_MAX_INPUT

_POSIX_MQ_OPEN_MAX

_POSIX_MQ_PRIO_MAX

_POSIX_NAME_MAX

_POSIX_NGROUPS_MAX

_POSIX_OPEN_MAX

_POSIX_PATH_MAX

_POSIX_PIPE_BUF

_POSIX_RE_DUP_MAX

_POSIX_RTSIG_MAX

_POSIX_SEM_NSEMS_MAX

_POSIX_SEM_VALUE_MAX

_POSIX_SIGQUEUE_MAX

_POSIX_SSIZE_MAX

_POSIX_STREAM_MAX

_POSIX_SYMLINK_MAX

_POSIX_SYMLOOP_MAX

_POSIX_THREAD_DESTRUCTOR_ITERATIONS

_POSIX_THREAD_KEYS_MAX

_POSIX_THREAD_THREADS_MAX

_POSIX_TIMER_MAX

_POSIX_TTY_NAME_MAX

_POSIX_TZNAME_MAX

_SIGSET_H_types

_STRUCT_TIMEVAL

_SYS_SYSMACROS_H

__BIT_TYPES_DEFINED__

__FLOAT_WORD_ORDER

__GLIBC_HAVE_LONG_LONG

__GLIBC_MINOR__

__GNU_LIBRARY__

__LITTLE_ENDIAN

__PRIPTR_PREFIX

__PTHREAD_MUTEX_HAVE_PREV

__SIZEOF_PTHREAD_ATTR_T

__SIZEOF_PTHREAD_BARRIERATTR_T

__SIZEOF_PTHREAD_BARRIER_T

__SIZEOF_PTHREAD_CONDATTR_T

__SIZEOF_PTHREAD_COND_T

__SIZEOF_PTHREAD_MUTEXATTR_T

__SIZEOF_PTHREAD_MUTEX_T

__SIZEOF_PTHREAD_RWLOCKATTR_T

__SIZEOF_PTHREAD_RWLOCK_T

__STDC_IEC_559_COMPLEX__

__STDC_IEC_559__

__STDC_ISO_10646__

__USE_FORTIFY_LEVEL

__USE_POSIX199309

__USE_POSIX199506

__USE_POSIX_IMPLICITLY

__WORDSIZE_COMPAT32

____FILE_defined

____gwchar_t_defined

__clock_t_defined

__clockid_t_defined

__codecvt_result___codecvt_error

__codecvt_result___codecvt_noconv

__codecvt_result___codecvt_ok

__codecvt_result___codecvt_partial

__ldiv_t_defined

__lldiv_t_defined

__mbstate_t_defined

__time_t_defined

__timer_t_defined

__timespec_defined

bcf_int8_missing

bcf_int8_vector_end

bcf_int16_missing

bcf_int16_vector_end

bcf_int32_missing

bcf_int32_vector_end

bcf_int64_missing

bcf_int64_vector_end

bcf_sr_error_api_usage_error

bcf_sr_error_bcf_read_error

bcf_sr_error_file_type_error

bcf_sr_error_header_error

bcf_sr_error_idx_load_failed

bcf_sr_error_no_eof

bcf_sr_error_no_memory

bcf_sr_error_not_bgzf

bcf_sr_error_open_failed

bcf_sr_error_vcf_parse_error

bcf_sr_opt_t_BCF_SR_PAIR_LOGIC

bcf_sr_opt_t_BCF_SR_REQUIRE_IDX

bcf_str_missing

bcf_str_vector_end

cram_block_method_BM_ERROR

cram_block_method_BZIP2

cram_block_method_GZIP

cram_block_method_GZIP_RLE

cram_block_method_LZMA

cram_block_method_RANS

cram_block_method_RANS0

cram_block_method_RANS1

cram_block_method_RAW

cram_content_type_COMPRESSION_HEADER

cram_content_type_CORE

cram_content_type_CT_ERROR

cram_content_type_EXTERNAL

cram_content_type_FILE_HEADER

cram_content_type_MAPPED_SLICE

cram_content_type_UNMAPPED_SLICE

fai_format_options_FAI_FASTA

fai_format_options_FAI_FASTQ

fai_format_options_FAI_NONE

fai_load_options_FAI_CREATE

htsCompression_bgzf

htsCompression_bzip2_compression

htsCompression_compression_maximum

htsCompression_custom

htsCompression_gzip

htsCompression_no_compression

htsExactFormat_bai

htsExactFormat_bam

htsExactFormat_bcf

htsExactFormat_bed

htsExactFormat_binary_format

htsExactFormat_crai

htsExactFormat_cram

htsExactFormat_csi

htsExactFormat_empty_format

htsExactFormat_fai_format

htsExactFormat_fasta_format

htsExactFormat_fastq_format

htsExactFormat_format_maximum

htsExactFormat_fqi_format

htsExactFormat_gzi

htsExactFormat_htsget

htsExactFormat_json

htsExactFormat_sam

htsExactFormat_tbi

htsExactFormat_text_format

htsExactFormat_unknown_format

htsExactFormat_vcf

htsFormatCategory_category_maximum

htsFormatCategory_index_file

htsFormatCategory_region_list

htsFormatCategory_sequence_data

htsFormatCategory_unknown_category

htsFormatCategory_variant_data

htsLogLevel_HTS_LOG_DEBUG

htsLogLevel_HTS_LOG_ERROR

htsLogLevel_HTS_LOG_INFO

htsLogLevel_HTS_LOG_OFF

htsLogLevel_HTS_LOG_TRACE

htsLogLevel_HTS_LOG_WARNING

hts_fmt_option_CRAM_OPT_BASES_PER_SLICE

hts_fmt_option_CRAM_OPT_DECODE_MD

hts_fmt_option_CRAM_OPT_EMBED_REF

hts_fmt_option_CRAM_OPT_IGNORE_MD5

hts_fmt_option_CRAM_OPT_LOSSY_NAMES

hts_fmt_option_CRAM_OPT_MULTI_SEQ_PER_SLICE

hts_fmt_option_CRAM_OPT_NO_REF

hts_fmt_option_CRAM_OPT_NTHREADS

hts_fmt_option_CRAM_OPT_PREFIX

hts_fmt_option_CRAM_OPT_RANGE

hts_fmt_option_CRAM_OPT_REFERENCE

hts_fmt_option_CRAM_OPT_REQUIRED_FIELDS

hts_fmt_option_CRAM_OPT_SEQS_PER_SLICE

hts_fmt_option_CRAM_OPT_SHARED_REF

hts_fmt_option_CRAM_OPT_SLICES_PER_CONTAINER

hts_fmt_option_CRAM_OPT_STORE_MD

hts_fmt_option_CRAM_OPT_STORE_NM

hts_fmt_option_CRAM_OPT_THREAD_POOL

hts_fmt_option_CRAM_OPT_USE_BZIP2

hts_fmt_option_CRAM_OPT_USE_LZMA

hts_fmt_option_CRAM_OPT_USE_RANS

hts_fmt_option_CRAM_OPT_VERBOSITY

hts_fmt_option_CRAM_OPT_VERSION

hts_fmt_option_HTS_OPT_BLOCK_SIZE

hts_fmt_option_HTS_OPT_CACHE_SIZE

hts_fmt_option_HTS_OPT_COMPRESSION_LEVEL

hts_fmt_option_HTS_OPT_NTHREADS

hts_fmt_option_HTS_OPT_THREAD_POOL

sam_fields_SAM_AUX

sam_fields_SAM_CIGAR

sam_fields_SAM_FLAG

sam_fields_SAM_MAPQ

sam_fields_SAM_PNEXT

sam_fields_SAM_POS

sam_fields_SAM_QNAME

sam_fields_SAM_QUAL

sam_fields_SAM_RGAUX

sam_fields_SAM_RNAME

sam_fields_SAM_RNEXT

sam_fields_SAM_SEQ

sam_fields_SAM_TLEN

Statics

Functions

_IO_flockfile^⚠

_IO_free_backup_area^⚠

_IO_ftrylockfile^⚠

_IO_funlockfile^⚠

_IO_peekc_locked^⚠

_IO_seekoff^⚠

_IO_seekpos^⚠

_IO_vfprintf^⚠

_IO_vfscanf^⚠

__assert_fail^⚠

__assert_perror_fail^⚠

__ctype_get_mb_cur_max^⚠

__errno_location^⚠

__secure_getenv^⚠

__underflow^⚠

a64l^⚠

abs^⚠

atof^⚠

atoi^⚠

atol^⚠

bam_auxB_len^⚠

bam_aux_append^⚠

bam_aux_del^⚠

bam_aux_get^⚠

bam_aux_update_array^⚠

bam_aux_update_float^⚠

bam_aux_update_int^⚠

bam_aux_update_str^⚠

bam_cigar2qlen^⚠

bam_cigar2rlen^⚠

bam_destroy1^⚠

bam_flag2str^⚠

bam_hdr_read^⚠

bam_hdr_write^⚠

bam_mplp64_auto^⚠

bam_mplp_auto^⚠

bam_mplp_constructor^⚠

bam_mplp_destroy^⚠

bam_mplp_destructor^⚠

bam_mplp_init^⚠

bam_mplp_init_overlaps^⚠

bam_mplp_reset^⚠

bam_mplp_set_maxcnt^⚠

bam_plp64_auto^⚠

bam_plp64_next^⚠

bam_plp_auto^⚠

bam_plp_constructor^⚠

bam_plp_destroy^⚠

bam_plp_destructor^⚠

bam_plp_init^⚠

bam_plp_insertion^⚠

bam_plp_next^⚠

bam_plp_push^⚠

bam_plp_reset^⚠

bam_plp_set_maxcnt^⚠

bam_set_qname^⚠

bam_str2flag^⚠

bcf_add_filter^⚠

bcf_calc_ac^⚠

bcf_destroy^⚠

bcf_enc_vchar^⚠

bcf_enc_vfloat^⚠

bcf_enc_vint^⚠

bcf_fmt_array^⚠

bcf_fmt_sized_array^⚠

bcf_get_fmt^⚠

bcf_get_fmt_id^⚠

bcf_get_format_string^⚠

bcf_get_format_values^⚠

bcf_get_info^⚠

bcf_get_info_id^⚠

bcf_get_info_values^⚠

bcf_get_variant_type^⚠

bcf_get_variant_types^⚠

bcf_gt_type^⚠

bcf_has_filter^⚠

bcf_hdr_add_hrec^⚠

bcf_hdr_add_sample^⚠

bcf_hdr_append^⚠

bcf_hdr_combine^⚠

bcf_hdr_destroy^⚠

bcf_hdr_dup^⚠

bcf_hdr_fmt_text^⚠

bcf_hdr_format^⚠

bcf_hdr_get_hrec^⚠

bcf_hdr_get_version^⚠

bcf_hdr_id2int^⚠

bcf_hdr_init^⚠

bcf_hdr_merge^⚠

bcf_hdr_parse^⚠

bcf_hdr_parse_line^⚠

bcf_hdr_printf^⚠

bcf_hdr_read^⚠

bcf_hdr_remove^⚠

bcf_hdr_seqnames^⚠

bcf_hdr_set^⚠

bcf_hdr_set_samples^⚠

bcf_hdr_set_version^⚠

bcf_hdr_subset^⚠

bcf_hdr_sync^⚠

bcf_hdr_write^⚠

bcf_hrec_add_key^⚠

bcf_hrec_destroy^⚠

bcf_hrec_dup^⚠

bcf_hrec_find_key^⚠

bcf_hrec_format^⚠

bcf_hrec_set_val^⚠

bcf_idx_init^⚠

bcf_idx_save^⚠

bcf_index_build^⚠

bcf_index_build2^⚠

bcf_index_build3^⚠

bcf_index_load2^⚠

bcf_index_load3^⚠

bcf_readrec^⚠

bcf_remove_allele_set^⚠

bcf_remove_alleles^⚠

bcf_remove_filter^⚠

bcf_sr_add_reader^⚠

bcf_sr_destroy^⚠

bcf_sr_destroy_threads^⚠

bcf_sr_init^⚠

bcf_sr_next_line^⚠

bcf_sr_regions_destroy^⚠

bcf_sr_regions_flush^⚠

bcf_sr_regions_init^⚠

bcf_sr_regions_next^⚠

bcf_sr_regions_overlap^⚠

bcf_sr_regions_seek^⚠

bcf_sr_remove_reader^⚠

bcf_sr_seek^⚠

bcf_sr_set_opt^⚠

bcf_sr_set_regions^⚠

bcf_sr_set_samples^⚠

bcf_sr_set_targets^⚠

bcf_sr_set_threads^⚠

bcf_sr_strerror^⚠

bcf_subset_format^⚠

bcf_translate^⚠

bcf_trim_alleles^⚠

bcf_update_alleles^⚠

bcf_update_alleles_str^⚠

bcf_update_filter^⚠

bcf_update_format^⚠

bcf_update_format_string^⚠

bcf_update_id^⚠

bcf_update_info^⚠

bcmp^⚠

bgzf_block_write^⚠

bgzf_check_EOF^⚠

bgzf_compress^⚠

bgzf_compression^⚠

bgzf_flush_try^⚠

bgzf_getline^⚠

bgzf_index_build_init^⚠

bgzf_index_dump^⚠

bgzf_index_dump_hfile^⚠

bgzf_index_load^⚠

bgzf_index_load_hfile^⚠

bgzf_is_bgzf^⚠

bgzf_raw_read^⚠

bgzf_raw_write^⚠

bgzf_read_block^⚠

bgzf_set_cache_size^⚠

bgzf_thread_pool^⚠

clearerr_unlocked^⚠

cram_block_append^⚠

cram_block_get_comp_size^⚠

cram_block_get_content_id^⚠

cram_block_get_content_type^⚠

cram_block_get_crc32^⚠

cram_block_get_data^⚠

cram_block_get_offset^⚠

cram_block_get_uncomp_size^⚠

cram_block_set_comp_size^⚠

cram_block_set_content_id^⚠

cram_block_set_crc32^⚠

cram_block_set_data^⚠

cram_block_set_offset^⚠

cram_block_set_uncomp_size^⚠

cram_block_size^⚠

cram_block_update_size^⚠

cram_check_EOF^⚠

cram_compress_block^⚠

cram_container_get_landmarks^⚠

cram_container_get_length^⚠

cram_container_get_num_blocks^⚠

cram_container_is_empty^⚠

cram_container_set_landmarks^⚠

cram_container_set_length^⚠

cram_container_set_num_blocks^⚠

cram_container_size^⚠

cram_copy_slice^⚠

cram_fd_get_fp^⚠

cram_fd_get_header^⚠

cram_fd_get_version^⚠

cram_fd_set_fp^⚠

cram_fd_set_header^⚠

cram_fd_set_version^⚠

cram_free_block^⚠

cram_free_container^⚠

cram_get_refs^⚠

cram_major_vers^⚠

cram_minor_vers^⚠

cram_new_block^⚠

cram_new_container^⚠

cram_read_block^⚠

cram_read_container^⚠

cram_set_header^⚠

cram_set_option^⚠

cram_set_voption^⚠

cram_store_container^⚠

cram_transcode_rg^⚠

cram_uncompress_block^⚠

cram_write_block^⚠

cram_write_container^⚠

div^⚠

ecvt^⚠

errmod_destroy^⚠

errmod_init^⚠

exit^⚠

fai_destroy^⚠

fai_fetch64^⚠

fai_fetchqual^⚠

fai_fetchqual64^⚠

fai_load3_format^⚠

fai_load_format^⚠

fai_parse_region^⚠

fai_set_cache_size^⚠

faidx_fetch_nseq^⚠

faidx_fetch_qual^⚠

faidx_fetch_qual64^⚠

faidx_fetch_seq^⚠

faidx_fetch_seq64^⚠

faidx_has_seq^⚠

faidx_seq_len^⚠

fcvt^⚠

feof^⚠

feof_unlocked^⚠

ferror_unlocked^⚠

fflush_unlocked^⚠

ffs^⚠

fgetc_unlocked^⚠

fileno_unlocked^⚠

fputc_unlocked^⚠

fread_unlocked^⚠

free^⚠

ftrylockfile^⚠

funlockfile^⚠

fwrite_unlocked^⚠

gcvt^⚠

getc^⚠

getc_unlocked^⚠

getchar_unlocked^⚠

gets^⚠

getw^⚠

gnu_dev_major^⚠

gnu_dev_makedev^⚠

gnu_dev_minor^⚠

hrec_add_idx^⚠

hts_check_EOF^⚠

hts_detect_format^⚠

hts_file_type^⚠

hts_format_description^⚠

hts_format_file_extension^⚠

hts_get_bgzfp^⚠

hts_get_format^⚠

hts_get_log_level^⚠

hts_getline^⚠

hts_idx_destroy^⚠

hts_idx_finish^⚠

hts_idx_fmt^⚠

hts_idx_get_meta^⚠

hts_idx_get_n_no_coor^⚠

hts_idx_get_stat^⚠

hts_idx_init^⚠

hts_idx_load^⚠

hts_idx_load2^⚠

hts_idx_load3^⚠

hts_idx_push^⚠

hts_idx_save^⚠

hts_idx_save_as^⚠

hts_idx_seqnames^⚠

hts_idx_set_meta^⚠

hts_idx_tbi_name^⚠

hts_itr_destroy^⚠

hts_itr_multi_bam^⚠

hts_itr_multi_cram^⚠

hts_itr_multi_next^⚠

hts_itr_next^⚠

hts_itr_query^⚠

hts_itr_querys^⚠

hts_itr_regions^⚠

hts_md5_destroy^⚠

hts_md5_final^⚠

hts_md5_hex^⚠

hts_md5_init^⚠

hts_md5_reset^⚠

hts_md5_update^⚠

hts_open_format^⚠

hts_opt_add^⚠

hts_opt_apply^⚠

hts_opt_free^⚠

hts_parse_decimal^⚠

hts_parse_format^⚠

hts_parse_opt_list^⚠

hts_parse_reg^⚠

hts_parse_reg64^⚠

hts_parse_region^⚠

hts_readlines^⚠

hts_readlist^⚠

hts_reglist_create^⚠

hts_reglist_free^⚠

hts_resize_array_^⚠

hts_set_cache_size^⚠

hts_set_fai_filename^⚠

hts_set_log_level^⚠

hts_set_opt^⚠

hts_set_thread_pool^⚠

hts_set_threads^⚠

hts_tpool_delete_result^⚠

hts_tpool_destroy^⚠

hts_tpool_dispatch^⚠

hts_tpool_dispatch2^⚠

hts_tpool_dispatch3^⚠

hts_tpool_init^⚠

hts_tpool_kill^⚠

hts_tpool_next_result^⚠

hts_tpool_next_result_wait^⚠

hts_tpool_process_attach^⚠

hts_tpool_process_destroy^⚠

hts_tpool_process_detach^⚠

hts_tpool_process_empty^⚠

hts_tpool_process_flush^⚠

hts_tpool_process_init^⚠

hts_tpool_process_len^⚠

hts_tpool_process_qsize^⚠

hts_tpool_process_ref_decr^⚠

hts_tpool_process_ref_incr^⚠

hts_tpool_process_reset^⚠

hts_tpool_process_shutdown^⚠

hts_tpool_process_sz^⚠

hts_tpool_result_data^⚠

hts_tpool_size^⚠

hts_tpool_wake_dispatch^⚠

hts_version^⚠

initstate_r^⚠

int32_put_blk^⚠

kbs_destroy^⚠

ksplit_core^⚠

l64a^⚠

labs^⚠

ldiv^⚠

open_memstream^⚠

posix_memalign^⚠

probaln_glocal^⚠

putc^⚠

putc_unlocked^⚠

putchar_unlocked^⚠

puts^⚠

putw^⚠

rand^⚠

sam_cap_mapq^⚠

sam_format1^⚠

sam_hdr_add_line^⚠

sam_hdr_add_lines^⚠

sam_hdr_add_pg^⚠

sam_hdr_change_HD^⚠

sam_hdr_count_lines^⚠

sam_hdr_destroy^⚠

sam_hdr_dup^⚠

sam_hdr_find_line_id^⚠

sam_hdr_find_line_pos^⚠

sam_hdr_find_tag_id^⚠

sam_hdr_find_tag_pos^⚠

sam_hdr_incr_ref^⚠

sam_hdr_init^⚠

sam_hdr_length^⚠

sam_hdr_line_index^⚠

sam_hdr_line_name^⚠

sam_hdr_name2tid^⚠

sam_hdr_nref^⚠

sam_hdr_parse^⚠

sam_hdr_pg_id^⚠

sam_hdr_read^⚠

sam_hdr_remove_except^⚠

sam_hdr_remove_line_id^⚠

sam_hdr_remove_line_pos^⚠

sam_hdr_remove_lines^⚠

sam_hdr_remove_tag_id^⚠

sam_hdr_str^⚠

sam_hdr_tid2len^⚠

sam_hdr_tid2name^⚠

sam_hdr_update_line^⚠

sam_hdr_write^⚠

sam_idx_init^⚠

sam_idx_save^⚠

sam_index_build^⚠

sam_index_build2^⚠

sam_index_build3^⚠

sam_index_load^⚠

sam_index_load2^⚠

sam_index_load3^⚠

sam_itr_queryi^⚠

sam_itr_querys^⚠

sam_itr_regarray^⚠

sam_itr_regions^⚠

sam_open_mode^⚠

sam_open_mode_opts^⚠

sam_parse_region^⚠

sam_prob_realn^⚠

stringify_argv^⚠

strncasecmp^⚠

tbx_destroy^⚠

tbx_index_build^⚠

tbx_index_build2^⚠

tbx_index_build3^⚠

tbx_index_load^⚠

tbx_index_load2^⚠

tbx_index_load3^⚠

tbx_name2id^⚠

tbx_readrec^⚠

tbx_seqnames^⚠

vcf_hdr_read^⚠

vcf_hdr_write^⚠

vcf_write_line^⚠

Type Definitions

__builtin_va_list

__codecvt_result

__pthread_list_t

bcf_sr_regions_t

cram_block_method

cram_content_type

fai_format_options

fai_load_options

htsFormatCategory

hts_itr_multi_query_func

hts_itr_multi_t

hts_itr_query_func

hts_readrec_func

pthread_spinlock_t

Unions

__mbstate_t__bindgen_ty_1

bcf_info_t__bindgen_ty_1

htsFile__bindgen_ty_1

hts_opt__bindgen_ty_1

pthread_barrier_t

pthread_barrierattr_t

pthread_condattr_t

pthread_mutex_t

pthread_mutexattr_t

pthread_rwlock_t

pthread_rwlockattr_t