[−] List of all items
Structs
- bam::ChunkIterator
- bam::HeaderView
- bam::IndexedReader
- bam::Reader
- bam::Records
- bam::Writer
- bam::buffer::RecordBuffer
- bam::errors::BuildIndex
- bam::errors::Fetch
- bam::errors::FileNotFound
- bam::errors::InvalidCompressionLevel
- bam::errors::InvalidIndex
- bam::errors::InvalidRecord
- bam::errors::InvalidReferencePath
- bam::errors::NonUnicodePath
- bam::errors::NotIndexable
- bam::errors::Open
- bam::errors::ParseCigar
- bam::errors::ParseSAM
- bam::errors::Pileup
- bam::errors::Seek
- bam::errors::SetThreads
- bam::errors::TruncatedRecord
- bam::errors::UnexpectedCigarOperation
- bam::errors::UnknownSequence
- bam::errors::Write
- bam::errors::WriteIndex
- bam::header::Header
- bam::header::HeaderRecord
- bam::pileup::Alignment
- bam::pileup::Pileup
- bam::pileup::Pileups
- bam::record::CigarString
- bam::record::CigarStringView
- bam::record::Record
- bam::record::Seq
- bcf::IndexedReader
- bcf::Reader
- bcf::Records
- bcf::Writer
- bcf::buffer::RecordBuffer
- bcf::errors::AllocationError
- bcf::errors::DuplicateSampleNames
- bcf::errors::InvalidRecord
- bcf::errors::MissingTag
- bcf::errors::NonUnicodePath
- bcf::errors::Open
- bcf::errors::RemoveAlleles
- bcf::errors::Seek
- bcf::errors::SetTag
- bcf::errors::SetThreads
- bcf::errors::SetValues
- bcf::errors::UndefinedTag
- bcf::errors::UnexpectedType
- bcf::errors::UnknownContig
- bcf::errors::UnknownID
- bcf::errors::UnknownRID
- bcf::errors::UnknownSample
- bcf::errors::Write
- bcf::header::Header
- bcf::header::HeaderView
- bcf::header::Id
- bcf::record::Filters
- bcf::record::Format
- bcf::record::Genotype
- bcf::record::Genotypes
- bcf::record::Info
- bcf::record::Record
- bcf::synced::SyncedReader
- htslib::BGZF
- htslib::SAM_hdr
- htslib::_G_fpos64_t
- htslib::_G_fpos_t
- htslib::_IO_FILE
- htslib::_IO_FILE_plus
- htslib::_IO_jump_t
- htslib::_IO_marker
- htslib::__BindgenBitfieldUnit
- htslib::__bam_mplp_t
- htslib::__bam_plp_t
- htslib::__bgzidx_t
- htslib::__fsid_t
- htslib::__hts_idx_t
- htslib::__kstring_t
- htslib::__locale_data
- htslib::__locale_struct
- htslib::__mbstate_t
- htslib::__pthread_cond_s
- htslib::__pthread_cond_s__bindgen_ty_1__bindgen_ty_1
- htslib::__pthread_cond_s__bindgen_ty_2__bindgen_ty_1
- htslib::__pthread_internal_list
- htslib::__pthread_mutex_s
- htslib::__pthread_rwlock_arch_t
- htslib::__sigset_t
- htslib::__va_list_tag
- htslib::_bcf_sr_regions_t
- htslib::_region_t
- htslib::aux_key_t
- htslib::bam1_core_t
- htslib::bam1_t
- htslib::bam_hdr_t
- htslib::bam_pileup1_t
- htslib::bcf1_t
- htslib::bcf_dec_t
- htslib::bcf_fmt_t
- htslib::bcf_hdr_t
- htslib::bcf_hrec_t
- htslib::bcf_idinfo_t
- htslib::bcf_idpair_t
- htslib::bcf_info_t
- htslib::bcf_sr_t
- htslib::bcf_srs_t
- htslib::bgzf_cache_t
- htslib::bgzf_mtaux_t
- htslib::cram_block
- htslib::cram_block_compression_hdr
- htslib::cram_block_slice_hdr
- htslib::cram_container
- htslib::cram_fd
- htslib::cram_file_def
- htslib::cram_metrics
- htslib::cram_slice
- htslib::div_t
- htslib::drand48_data
- htslib::errmod_t
- htslib::fd_set
- htslib::gzFile_s
- htslib::gz_header_s
- htslib::hFILE
- htslib::htsFile
- htslib::htsFormat
- htslib::htsFormat__bindgen_ty_1
- htslib::htsThreadPool
- htslib::hts_itr_multi_t
- htslib::hts_itr_t
- htslib::hts_itr_t__bindgen_ty_1
- htslib::hts_md5_context
- htslib::hts_opt
- htslib::hts_pair32_t
- htslib::hts_pair64_max_t
- htslib::hts_pair64_t
- htslib::hts_reglist_t
- htslib::hts_tpool
- htslib::internal_state
- htslib::kbitset_iter_t
- htslib::kbitset_t
- htslib::ks_tokaux_t
- htslib::ldiv_t
- htslib::lldiv_t
- htslib::probaln_par_t
- htslib::random_data
- htslib::refs_t
- htslib::tbx_conf_t
- htslib::tbx_t
- htslib::timespec
- htslib::timeval
- htslib::variant_t
- htslib::z_stream_s
- tbx::Reader
- tbx::Records
- tbx::errors::Fetch
- tbx::errors::FileNotFound
- tbx::errors::InvalidIndex
- tbx::errors::NoIter
- tbx::errors::NonUnicodePath
- tbx::errors::SetThreads
- tbx::errors::TruncatedRecord
- tbx::errors::UnknownSequence
Enums
- bam::CompressionLevel
- bam::Format
- bam::errors::Error
- bam::index::Type
- bam::pileup::Indel
- bam::record::Aux
- bam::record::Cigar
- bcf::Format
- bcf::errors::Error
- bcf::header::HeaderRecord
- bcf::header::TagLength
- bcf::header::TagType
- bcf::record::GenotypeAllele
- tbx::errors::Error
Unions
- htslib::__mbstate_t__bindgen_ty_1
- htslib::__pthread_cond_s__bindgen_ty_1
- htslib::__pthread_cond_s__bindgen_ty_2
- htslib::bam_pileup_cd
- htslib::bcf_info_t__bindgen_ty_1
- htslib::htsFile__bindgen_ty_1
- htslib::hts_opt__bindgen_ty_1
- htslib::pthread_attr_t
- htslib::pthread_barrier_t
- htslib::pthread_barrierattr_t
- htslib::pthread_cond_t
- htslib::pthread_condattr_t
- htslib::pthread_mutex_t
- htslib::pthread_mutexattr_t
- htslib::pthread_rwlock_t
- htslib::pthread_rwlockattr_t
Traits
Functions
- bam::index::build
- bam::set_fai_filename
- bam::set_threads
- bcf::set_threads
- htslib::_Exit
- htslib::_IO_feof
- htslib::_IO_ferror
- htslib::_IO_flockfile
- htslib::_IO_free_backup_area
- htslib::_IO_ftrylockfile
- htslib::_IO_funlockfile
- htslib::_IO_getc
- htslib::_IO_padn
- htslib::_IO_peekc_locked
- htslib::_IO_putc
- htslib::_IO_seekoff
- htslib::_IO_seekpos
- htslib::_IO_sgetn
- htslib::_IO_vfprintf
- htslib::_IO_vfscanf
- htslib::__assert
- htslib::__assert_fail
- htslib::__assert_perror_fail
- htslib::__ctype_get_mb_cur_max
- htslib::__getdelim
- htslib::__getpgid
- htslib::__overflow
- htslib::__stpcpy
- htslib::__stpncpy
- htslib::__strtok_r
- htslib::__uflow
- htslib::__underflow
- htslib::_exit
- htslib::a64l
- htslib::abort
- htslib::abs
- htslib::access
- htslib::acct
- htslib::adler32
- htslib::adler32_combine
- htslib::adler32_z
- htslib::alarm
- htslib::aligned_alloc
- htslib::alloca
- htslib::at_quick_exit
- htslib::atexit
- htslib::atof
- htslib::atoi
- htslib::atol
- htslib::atoll
- htslib::bam_aux2A
- htslib::bam_aux2Z
- htslib::bam_aux2f
- htslib::bam_aux2i
- htslib::bam_auxB2f
- htslib::bam_auxB2i
- htslib::bam_auxB_len
- htslib::bam_aux_append
- htslib::bam_aux_del
- htslib::bam_aux_get
- htslib::bam_aux_update_array
- htslib::bam_aux_update_float
- htslib::bam_aux_update_int
- htslib::bam_aux_update_str
- htslib::bam_cigar2qlen
- htslib::bam_cigar2rlen
- htslib::bam_copy1
- htslib::bam_destroy1
- htslib::bam_dup1
- htslib::bam_endpos
- htslib::bam_flag2str
- htslib::bam_hdr_destroy
- htslib::bam_hdr_dup
- htslib::bam_hdr_init
- htslib::bam_hdr_read
- htslib::bam_hdr_write
- htslib::bam_init1
- htslib::bam_mplp_auto
- htslib::bam_mplp_constructor
- htslib::bam_mplp_destroy
- htslib::bam_mplp_destructor
- htslib::bam_mplp_init
- htslib::bam_mplp_init_overlaps
- htslib::bam_mplp_reset
- htslib::bam_mplp_set_maxcnt
- htslib::bam_name2id
- htslib::bam_plp_auto
- htslib::bam_plp_constructor
- htslib::bam_plp_destroy
- htslib::bam_plp_destructor
- htslib::bam_plp_init
- htslib::bam_plp_next
- htslib::bam_plp_push
- htslib::bam_plp_reset
- htslib::bam_plp_set_maxcnt
- htslib::bam_read1
- htslib::bam_str2flag
- htslib::bam_write1
- htslib::bcf_add_filter
- htslib::bcf_add_id
- htslib::bcf_calc_ac
- htslib::bcf_clear
- htslib::bcf_copy
- htslib::bcf_destroy
- htslib::bcf_dup
- htslib::bcf_empty
- htslib::bcf_enc_vchar
- htslib::bcf_enc_vfloat
- htslib::bcf_enc_vint
- htslib::bcf_fmt_array
- htslib::bcf_fmt_sized_array
- htslib::bcf_get_fmt
- htslib::bcf_get_fmt_id
- htslib::bcf_get_format_string
- htslib::bcf_get_format_values
- htslib::bcf_get_info
- htslib::bcf_get_info_id
- htslib::bcf_get_info_values
- htslib::bcf_get_variant_type
- htslib::bcf_get_variant_types
- htslib::bcf_gt_type
- htslib::bcf_has_filter
- htslib::bcf_hdr_add_hrec
- htslib::bcf_hdr_add_sample
- htslib::bcf_hdr_append
- htslib::bcf_hdr_combine
- htslib::bcf_hdr_destroy
- htslib::bcf_hdr_dup
- htslib::bcf_hdr_fmt_text
- htslib::bcf_hdr_format
- htslib::bcf_hdr_get_hrec
- htslib::bcf_hdr_get_version
- htslib::bcf_hdr_id2int
- htslib::bcf_hdr_init
- htslib::bcf_hdr_merge
- htslib::bcf_hdr_parse
- htslib::bcf_hdr_parse_line
- htslib::bcf_hdr_printf
- htslib::bcf_hdr_read
- htslib::bcf_hdr_remove
- htslib::bcf_hdr_seqnames
- htslib::bcf_hdr_set
- htslib::bcf_hdr_set_samples
- htslib::bcf_hdr_set_version
- htslib::bcf_hdr_subset
- htslib::bcf_hdr_sync
- htslib::bcf_hdr_write
- htslib::bcf_hrec_add_key
- htslib::bcf_hrec_destroy
- htslib::bcf_hrec_dup
- htslib::bcf_hrec_find_key
- htslib::bcf_hrec_format
- htslib::bcf_hrec_set_val
- htslib::bcf_index_build
- htslib::bcf_index_build2
- htslib::bcf_index_build3
- htslib::bcf_index_load2
- htslib::bcf_init
- htslib::bcf_is_snp
- htslib::bcf_read
- htslib::bcf_readrec
- htslib::bcf_remove_allele_set
- htslib::bcf_remove_alleles
- htslib::bcf_remove_filter
- htslib::bcf_sr_add_reader
- htslib::bcf_sr_destroy
- htslib::bcf_sr_destroy_threads
- htslib::bcf_sr_init
- htslib::bcf_sr_next_line
- htslib::bcf_sr_regions_destroy
- htslib::bcf_sr_regions_flush
- htslib::bcf_sr_regions_init
- htslib::bcf_sr_regions_next
- htslib::bcf_sr_regions_overlap
- htslib::bcf_sr_regions_seek
- htslib::bcf_sr_remove_reader
- htslib::bcf_sr_seek
- htslib::bcf_sr_set_opt
- htslib::bcf_sr_set_regions
- htslib::bcf_sr_set_samples
- htslib::bcf_sr_set_targets
- htslib::bcf_sr_set_threads
- htslib::bcf_sr_strerror
- htslib::bcf_subset
- htslib::bcf_subset_format
- htslib::bcf_translate
- htslib::bcf_trim_alleles
- htslib::bcf_unpack
- htslib::bcf_update_alleles
- htslib::bcf_update_alleles_str
- htslib::bcf_update_filter
- htslib::bcf_update_format
- htslib::bcf_update_format_string
- htslib::bcf_update_id
- htslib::bcf_update_info
- htslib::bcf_write
- htslib::bcmp
- htslib::bcopy
- htslib::bgzf_block_write
- htslib::bgzf_check_EOF
- htslib::bgzf_close
- htslib::bgzf_compress
- htslib::bgzf_compression
- htslib::bgzf_dopen
- htslib::bgzf_flush
- htslib::bgzf_flush_try
- htslib::bgzf_getc
- htslib::bgzf_getline
- htslib::bgzf_hopen
- htslib::bgzf_index_build_init
- htslib::bgzf_index_dump
- htslib::bgzf_index_dump_hfile
- htslib::bgzf_index_load
- htslib::bgzf_index_load_hfile
- htslib::bgzf_is_bgzf
- htslib::bgzf_mt
- htslib::bgzf_open
- htslib::bgzf_raw_read
- htslib::bgzf_raw_write
- htslib::bgzf_read
- htslib::bgzf_read_block
- htslib::bgzf_seek
- htslib::bgzf_set_cache_size
- htslib::bgzf_thread_pool
- htslib::bgzf_useek
- htslib::bgzf_utell
- htslib::bgzf_write
- htslib::brk
- htslib::bsearch
- htslib::bzero
- htslib::calloc
- htslib::chdir
- htslib::chown
- htslib::chroot
- htslib::clearenv
- htslib::clearerr
- htslib::clearerr_unlocked
- htslib::close
- htslib::compress
- htslib::compress2
- htslib::compressBound
- htslib::confstr
- htslib::cram_block_append
- htslib::cram_block_get_comp_size
- htslib::cram_block_get_content_id
- htslib::cram_block_get_content_type
- htslib::cram_block_get_crc32
- htslib::cram_block_get_data
- htslib::cram_block_get_offset
- htslib::cram_block_get_uncomp_size
- htslib::cram_block_set_comp_size
- htslib::cram_block_set_content_id
- htslib::cram_block_set_crc32
- htslib::cram_block_set_data
- htslib::cram_block_set_offset
- htslib::cram_block_set_uncomp_size
- htslib::cram_block_size
- htslib::cram_block_update_size
- htslib::cram_check_EOF
- htslib::cram_close
- htslib::cram_compress_block
- htslib::cram_container_get_landmarks
- htslib::cram_container_get_length
- htslib::cram_container_get_num_blocks
- htslib::cram_container_is_empty
- htslib::cram_container_set_landmarks
- htslib::cram_container_set_length
- htslib::cram_container_set_num_blocks
- htslib::cram_container_size
- htslib::cram_copy_slice
- htslib::cram_dopen
- htslib::cram_eof
- htslib::cram_fd_get_fp
- htslib::cram_fd_get_header
- htslib::cram_fd_get_version
- htslib::cram_fd_set_fp
- htslib::cram_fd_set_header
- htslib::cram_fd_set_version
- htslib::cram_flush
- htslib::cram_free_block
- htslib::cram_free_container
- htslib::cram_get_refs
- htslib::cram_major_vers
- htslib::cram_minor_vers
- htslib::cram_new_block
- htslib::cram_new_container
- htslib::cram_open
- htslib::cram_read_block
- htslib::cram_read_container
- htslib::cram_seek
- htslib::cram_set_header
- htslib::cram_set_option
- htslib::cram_set_voption
- htslib::cram_store_container
- htslib::cram_transcode_rg
- htslib::cram_uncompress_block
- htslib::cram_write_block
- htslib::cram_write_container
- htslib::crc32
- htslib::crc32_combine
- htslib::crc32_z
- htslib::ctermid
- htslib::daemon
- htslib::deflate
- htslib::deflateBound
- htslib::deflateCopy
- htslib::deflateEnd
- htslib::deflateGetDictionary
- htslib::deflateInit2_
- htslib::deflateInit_
- htslib::deflateParams
- htslib::deflatePending
- htslib::deflatePrime
- htslib::deflateReset
- htslib::deflateResetKeep
- htslib::deflateSetDictionary
- htslib::deflateSetHeader
- htslib::deflateTune
- htslib::div
- htslib::dprintf
- htslib::drand48
- htslib::drand48_r
- htslib::dup
- htslib::dup2
- htslib::ecvt
- htslib::ecvt_r
- htslib::endusershell
- htslib::erand48
- htslib::erand48_r
- htslib::errmod_cal
- htslib::errmod_destroy
- htslib::errmod_init
- htslib::execl
- htslib::execle
- htslib::execlp
- htslib::execv
- htslib::execve
- htslib::execvp
- htslib::exit
- htslib::explicit_bzero
- htslib::faccessat
- htslib::fchdir
- htslib::fchown
- htslib::fchownat
- htslib::fclose
- htslib::fcvt
- htslib::fcvt_r
- htslib::fdatasync
- htslib::fdopen
- htslib::feof
- htslib::feof_unlocked
- htslib::ferror
- htslib::ferror_unlocked
- htslib::fexecve
- htslib::fflush
- htslib::fflush_unlocked
- htslib::ffs
- htslib::ffsl
- htslib::ffsll
- htslib::fgetc
- htslib::fgetc_unlocked
- htslib::fgetpos
- htslib::fgets
- htslib::fileno
- htslib::fileno_unlocked
- htslib::flockfile
- htslib::fmemopen
- htslib::fopen
- htslib::fork
- htslib::fpathconf
- htslib::fprintf
- htslib::fputc
- htslib::fputc_unlocked
- htslib::fputs
- htslib::fread
- htslib::fread_unlocked
- htslib::free
- htslib::freopen
- htslib::fscanf
- htslib::fscanf1
- htslib::fseek
- htslib::fseeko
- htslib::fsetpos
- htslib::fsync
- htslib::ftell
- htslib::ftello
- htslib::ftruncate
- htslib::ftrylockfile
- htslib::funlockfile
- htslib::fwrite
- htslib::fwrite_unlocked
- htslib::gcvt
- htslib::get_crc_table
- htslib::getc
- htslib::getc_unlocked
- htslib::getchar
- htslib::getchar_unlocked
- htslib::getcwd
- htslib::getdelim
- htslib::getdomainname
- htslib::getdtablesize
- htslib::getegid
- htslib::getentropy
- htslib::getenv
- htslib::geteuid
- htslib::getgid
- htslib::getgroups
- htslib::gethostid
- htslib::gethostname
- htslib::getline
- htslib::getloadavg
- htslib::getlogin
- htslib::getlogin_r
- htslib::getopt
- htslib::getpagesize
- htslib::getpass
- htslib::getpgid
- htslib::getpgrp
- htslib::getpid
- htslib::getppid
- htslib::getsid
- htslib::getsubopt
- htslib::getuid
- htslib::getusershell
- htslib::getw
- htslib::getwd
- htslib::gnu_dev_major
- htslib::gnu_dev_makedev
- htslib::gnu_dev_minor
- htslib::gzbuffer
- htslib::gzclearerr
- htslib::gzclose
- htslib::gzclose_r
- htslib::gzclose_w
- htslib::gzdirect
- htslib::gzdopen
- htslib::gzeof
- htslib::gzerror
- htslib::gzflush
- htslib::gzfread
- htslib::gzfwrite
- htslib::gzgetc
- htslib::gzgetc_
- htslib::gzgets
- htslib::gzoffset
- htslib::gzopen
- htslib::gzprintf
- htslib::gzputc
- htslib::gzputs
- htslib::gzread
- htslib::gzrewind
- htslib::gzseek
- htslib::gzsetparams
- htslib::gztell
- htslib::gzungetc
- htslib::gzvprintf
- htslib::gzwrite
- htslib::hrec_add_idx
- htslib::hts_check_EOF
- htslib::hts_close
- htslib::hts_detect_format
- htslib::hts_file_type
- htslib::hts_format_description
- htslib::hts_format_file_extension
- htslib::hts_get_bgzfp
- htslib::hts_get_format
- htslib::hts_get_log_level
- htslib::hts_getline
- htslib::hts_hopen
- htslib::hts_idx_destroy
- htslib::hts_idx_finish
- htslib::hts_idx_get_meta
- htslib::hts_idx_get_n_no_coor
- htslib::hts_idx_get_stat
- htslib::hts_idx_init
- htslib::hts_idx_load
- htslib::hts_idx_load2
- htslib::hts_idx_push
- htslib::hts_idx_save
- htslib::hts_idx_save_as
- htslib::hts_idx_seqnames
- htslib::hts_idx_set_meta
- htslib::hts_itr_destroy
- htslib::hts_itr_multi_bam
- htslib::hts_itr_multi_cram
- htslib::hts_itr_multi_destroy
- htslib::hts_itr_multi_next
- htslib::hts_itr_next
- htslib::hts_itr_query
- htslib::hts_itr_querys
- htslib::hts_itr_regions
- htslib::hts_log
- htslib::hts_md5_destroy
- htslib::hts_md5_final
- htslib::hts_md5_hex
- htslib::hts_md5_init
- htslib::hts_md5_reset
- htslib::hts_md5_update
- htslib::hts_open
- htslib::hts_open_format
- htslib::hts_opt_add
- htslib::hts_opt_apply
- htslib::hts_opt_free
- htslib::hts_parse_decimal
- htslib::hts_parse_format
- htslib::hts_parse_opt_list
- htslib::hts_parse_reg
- htslib::hts_readlines
- htslib::hts_readlist
- htslib::hts_reglist_free
- htslib::hts_set_cache_size
- htslib::hts_set_fai_filename
- htslib::hts_set_log_level
- htslib::hts_set_opt
- htslib::hts_set_thread_pool
- htslib::hts_set_threads
- htslib::hts_version
- htslib::index
- htslib::inflate
- htslib::inflateBack
- htslib::inflateBackEnd
- htslib::inflateBackInit_
- htslib::inflateCodesUsed
- htslib::inflateCopy
- htslib::inflateEnd
- htslib::inflateGetDictionary
- htslib::inflateGetHeader
- htslib::inflateInit2_
- htslib::inflateInit_
- htslib::inflateMark
- htslib::inflatePrime
- htslib::inflateReset
- htslib::inflateReset2
- htslib::inflateResetKeep
- htslib::inflateSetDictionary
- htslib::inflateSync
- htslib::inflateSyncPoint
- htslib::inflateUndermine
- htslib::inflateValidate
- htslib::initstate
- htslib::initstate_r
- htslib::int32_put_blk
- htslib::isatty
- htslib::jrand48
- htslib::jrand48_r
- htslib::kbs_destroy
- htslib::kbs_init
- htslib::kbs_init2
- htslib::kbs_insert
- htslib::kgetline
- htslib::kmemmem
- htslib::kputd
- htslib::ksplit_core
- htslib::ksprintf
- htslib::kstrnstr
- htslib::kstrstr
- htslib::kstrtok
- htslib::kvsprintf
- htslib::l64a
- htslib::labs
- htslib::lchown
- htslib::lcong48
- htslib::lcong48_r
- htslib::ldiv
- htslib::link
- htslib::linkat
- htslib::llabs
- htslib::lldiv
- htslib::lockf
- htslib::lrand48
- htslib::lrand48_r
- htslib::lseek
- htslib::malloc
- htslib::mblen
- htslib::mbstowcs
- htslib::mbtowc
- htslib::memccpy
- htslib::memchr
- htslib::memcmp
- htslib::memcpy
- htslib::memmove
- htslib::memset
- htslib::mkdtemp
- htslib::mkstemp
- htslib::mkstemps
- htslib::mktemp
- htslib::mrand48
- htslib::mrand48_r
- htslib::nice
- htslib::nrand48
- htslib::nrand48_r
- htslib::on_exit
- htslib::open_memstream
- htslib::pathconf
- htslib::pause
- htslib::pclose
- htslib::perror
- htslib::pipe
- htslib::popen
- htslib::posix_memalign
- htslib::pread
- htslib::printf
- htslib::probaln_glocal
- htslib::profil
- htslib::pselect
- htslib::putc
- htslib::putc_unlocked
- htslib::putchar
- htslib::putchar_unlocked
- htslib::putenv
- htslib::puts
- htslib::putw
- htslib::pwrite
- htslib::qecvt
- htslib::qecvt_r
- htslib::qfcvt
- htslib::qfcvt_r
- htslib::qgcvt
- htslib::qsort
- htslib::quick_exit
- htslib::rand
- htslib::rand_r
- htslib::random
- htslib::random_r
- htslib::read
- htslib::readlink
- htslib::readlinkat
- htslib::realloc
- htslib::realpath
- htslib::remove
- htslib::rename
- htslib::renameat
- htslib::revoke
- htslib::rewind
- htslib::rindex
- htslib::rmdir
- htslib::rpmatch
- htslib::sam_cap_mapq
- htslib::sam_format1
- htslib::sam_hdr_add_PG
- htslib::sam_hdr_change_HD
- htslib::sam_hdr_free
- htslib::sam_hdr_length
- htslib::sam_hdr_parse
- htslib::sam_hdr_parse_
- htslib::sam_hdr_read
- htslib::sam_hdr_str
- htslib::sam_hdr_write
- htslib::sam_index_build
- htslib::sam_index_build2
- htslib::sam_index_build3
- htslib::sam_index_load
- htslib::sam_index_load2
- htslib::sam_itr_queryi
- htslib::sam_itr_querys
- htslib::sam_itr_regions
- htslib::sam_open_mode
- htslib::sam_open_mode_opts
- htslib::sam_parse1
- htslib::sam_prob_realn
- htslib::sam_read1
- htslib::sam_write1
- htslib::sbrk
- htslib::scanf
- htslib::scanf1
- htslib::seed48
- htslib::seed48_r
- htslib::select
- htslib::setbuf
- htslib::setbuffer
- htslib::setdomainname
- htslib::setegid
- htslib::setenv
- htslib::seteuid
- htslib::setgid
- htslib::sethostid
- htslib::sethostname
- htslib::setlinebuf
- htslib::setlogin
- htslib::setpgid
- htslib::setpgrp
- htslib::setregid
- htslib::setreuid
- htslib::setsid
- htslib::setstate
- htslib::setstate_r
- htslib::setuid
- htslib::setusershell
- htslib::setvbuf
- htslib::sleep
- htslib::snprintf
- htslib::sprintf
- htslib::srand
- htslib::srand48
- htslib::srand48_r
- htslib::srandom
- htslib::srandom_r
- htslib::sscanf
- htslib::sscanf1
- htslib::stpcpy
- htslib::stpncpy
- htslib::strcasecmp
- htslib::strcasecmp_l
- htslib::strcat
- htslib::strchr
- htslib::strcmp
- htslib::strcoll
- htslib::strcoll_l
- htslib::strcpy
- htslib::strcspn
- htslib::strdup
- htslib::strerror
- htslib::strerror_l
- htslib::strerror_r
- htslib::stringify_argv
- htslib::strlen
- htslib::strncasecmp
- htslib::strncasecmp_l
- htslib::strncat
- htslib::strncmp
- htslib::strncpy
- htslib::strndup
- htslib::strnlen
- htslib::strpbrk
- htslib::strrchr
- htslib::strsep
- htslib::strsignal
- htslib::strspn
- htslib::strstr
- htslib::strtod
- htslib::strtof
- htslib::strtok
- htslib::strtok_r
- htslib::strtol
- htslib::strtoll
- htslib::strtoq
- htslib::strtoul
- htslib::strtoull
- htslib::strtouq
- htslib::strxfrm
- htslib::strxfrm_l
- htslib::symlink
- htslib::symlinkat
- htslib::sync
- htslib::syscall
- htslib::sysconf
- htslib::system
- htslib::tbx_destroy
- htslib::tbx_index
- htslib::tbx_index_build
- htslib::tbx_index_build2
- htslib::tbx_index_build3
- htslib::tbx_index_load
- htslib::tbx_index_load2
- htslib::tbx_name2id
- htslib::tbx_readrec
- htslib::tbx_seqnames
- htslib::tcgetpgrp
- htslib::tcsetpgrp
- htslib::tempnam
- htslib::tmpfile
- htslib::tmpnam
- htslib::tmpnam_r
- htslib::truncate
- htslib::ttyname
- htslib::ttyname_r
- htslib::ttyslot
- htslib::ualarm
- htslib::uncompress
- htslib::uncompress2
- htslib::ungetc
- htslib::unlink
- htslib::unlinkat
- htslib::unsetenv
- htslib::usleep
- htslib::valloc
- htslib::vcf_format
- htslib::vcf_hdr_read
- htslib::vcf_hdr_write
- htslib::vcf_parse
- htslib::vcf_read
- htslib::vcf_write
- htslib::vdprintf
- htslib::vfork
- htslib::vfprintf
- htslib::vfscanf
- htslib::vfscanf1
- htslib::vhangup
- htslib::vprintf
- htslib::vscanf
- htslib::vscanf1
- htslib::vsnprintf
- htslib::vsprintf
- htslib::vsscanf
- htslib::vsscanf1
- htslib::wcstombs
- htslib::wctomb
- htslib::write
- htslib::zError
- htslib::zlibCompileFlags
- htslib::zlibVersion
- utils::copy_memory
- utils::path_to_cstring
Typedefs
- bam::errors::Result
- bam::pileup::Alignments
- bcf::errors::Result
- bcf::header::SampleSubset
- htslib::Byte
- htslib::Bytef
- htslib::FILE
- htslib::_Float32
- htslib::_Float32x
- htslib::_Float64
- htslib::_Float64x
- htslib::_IO_lock_t
- htslib::__FILE
- htslib::__blkcnt64_t
- htslib::__blkcnt_t
- htslib::__blksize_t
- htslib::__builtin_va_list
- htslib::__caddr_t
- htslib::__clock_t
- htslib::__clockid_t
- htslib::__codecvt_result
- htslib::__compar_fn_t
- htslib::__daddr_t
- htslib::__dev_t
- htslib::__fd_mask
- htslib::__fsblkcnt64_t
- htslib::__fsblkcnt_t
- htslib::__fsfilcnt64_t
- htslib::__fsfilcnt_t
- htslib::__fsword_t
- htslib::__gid_t
- htslib::__gnuc_va_list
- htslib::__id_t
- htslib::__ino64_t
- htslib::__ino_t
- htslib::__int16_t
- htslib::__int32_t
- htslib::__int64_t
- htslib::__int8_t
- htslib::__intmax_t
- htslib::__intptr_t
- htslib::__io_close_fn
- htslib::__io_read_fn
- htslib::__io_seek_fn
- htslib::__io_write_fn
- htslib::__key_t
- htslib::__locale_t
- htslib::__loff_t
- htslib::__mode_t
- htslib::__nlink_t
- htslib::__off64_t
- htslib::__off_t
- htslib::__pid_t
- htslib::__pthread_list_t
- htslib::__quad_t
- htslib::__rlim64_t
- htslib::__rlim_t
- htslib::__sig_atomic_t
- htslib::__socklen_t
- htslib::__ssize_t
- htslib::__suseconds_t
- htslib::__syscall_slong_t
- htslib::__syscall_ulong_t
- htslib::__time_t
- htslib::__timer_t
- htslib::__u_char
- htslib::__u_int
- htslib::__u_long
- htslib::__u_quad_t
- htslib::__u_short
- htslib::__uid_t
- htslib::__uint16_t
- htslib::__uint32_t
- htslib::__uint64_t
- htslib::__uint8_t
- htslib::__uintmax_t
- htslib::__useconds_t
- htslib::_bindgen_ty_1
- htslib::_bindgen_ty_2
- htslib::_bindgen_ty_3
- htslib::alloc_func
- htslib::bam_mplp_t
- htslib::bam_plp_auto_f
- htslib::bam_plp_t
- htslib::bcf_sr_error
- htslib::bcf_sr_opt_t
- htslib::bcf_sr_regions_t
- htslib::bgzidx_t
- htslib::blkcnt_t
- htslib::blksize_t
- htslib::caddr_t
- htslib::charf
- htslib::clock_t
- htslib::clockid_t
- htslib::cram_block_method
- htslib::cram_content_type
- htslib::daddr_t
- htslib::dev_t
- htslib::fd_mask
- htslib::fpos_t
- htslib::free_func
- htslib::fsblkcnt_t
- htslib::fsfilcnt_t
- htslib::fsid_t
- htslib::gid_t
- htslib::gzFile
- htslib::gz_header
- htslib::gz_headerp
- htslib::htsCompression
- htslib::htsExactFormat
- htslib::htsFormatCategory
- htslib::htsLogLevel
- htslib::hts_fmt_option
- htslib::hts_id2name_f
- htslib::hts_idx_t
- htslib::hts_itr_multi_query_func
- htslib::hts_itr_query_func
- htslib::hts_name2id_f
- htslib::hts_readrec_func
- htslib::hts_seek_func
- htslib::hts_tell_func
- htslib::id_t
- htslib::idtype_t
- htslib::in_func
- htslib::ino_t
- htslib::int_fast16_t
- htslib::int_fast32_t
- htslib::int_fast64_t
- htslib::int_fast8_t
- htslib::int_least16_t
- htslib::int_least32_t
- htslib::int_least64_t
- htslib::int_least8_t
- htslib::intf
- htslib::intmax_t
- htslib::key_t
- htslib::kgets_func
- htslib::kstring_t
- htslib::locale_t
- htslib::loff_t
- htslib::mode_t
- htslib::nlink_t
- htslib::off_t
- htslib::out_func
- htslib::pid_t
- htslib::pthread_key_t
- htslib::pthread_once_t
- htslib::pthread_spinlock_t
- htslib::pthread_t
- htslib::quad_t
- htslib::register_t
- htslib::samFile
- htslib::sam_fields
- htslib::sigset_t
- htslib::socklen_t
- htslib::suseconds_t
- htslib::time_t
- htslib::timer_t
- htslib::uInt
- htslib::uIntf
- htslib::uLong
- htslib::uLongf
- htslib::u_char
- htslib::u_int
- htslib::u_int16_t
- htslib::u_int32_t
- htslib::u_int64_t
- htslib::u_int8_t
- htslib::u_long
- htslib::u_quad_t
- htslib::u_short
- htslib::uid_t
- htslib::uint
- htslib::uint16_u
- htslib::uint32_u
- htslib::uint64_u
- htslib::uint_fast16_t
- htslib::uint_fast32_t
- htslib::uint_fast64_t
- htslib::uint_fast8_t
- htslib::uint_least16_t
- htslib::uint_least32_t
- htslib::uint_least64_t
- htslib::uint_least8_t
- htslib::uintmax_t
- htslib::ulong
- htslib::useconds_t
- htslib::ushort
- htslib::va_list
- htslib::vcfFile
- htslib::voidp
- htslib::voidpc
- htslib::voidpf
- htslib::wchar_t
- htslib::z_crc_t
- htslib::z_size_t
- htslib::z_stream
- htslib::z_streamp
- tbx::errors::Result
Statics
- htslib::_IO_2_1_stderr_
- htslib::_IO_2_1_stdin_
- htslib::_IO_2_1_stdout_
- htslib::__environ
- htslib::bcf_float_missing
- htslib::bcf_float_vector_end
- htslib::bcf_type_shift
- htslib::hts_verbose
- htslib::optarg
- htslib::opterr
- htslib::optind
- htslib::optopt
- htslib::seq_nt16_int
- htslib::seq_nt16_str
- htslib::seq_nt16_table
- htslib::stderr
- htslib::stdin
- htslib::stdout
- htslib::sys_errlist
- htslib::sys_nerr
- htslib::tbx_conf_bed
- htslib::tbx_conf_gff
- htslib::tbx_conf_psltbl
- htslib::tbx_conf_sam
- htslib::tbx_conf_vcf
Constants
- bcf::synced::pairing::ANY
- bcf::synced::pairing::BOTH
- bcf::synced::pairing::BOTH_REF
- bcf::synced::pairing::EXACT
- bcf::synced::pairing::INDELS
- bcf::synced::pairing::INDEL_REF
- bcf::synced::pairing::SNPS
- bcf::synced::pairing::SNP_REF
- bcf::synced::pairing::SOME
- htslib::AIO_PRIO_DELTA_MAX
- htslib::ARG_MAX
- htslib::BAM_CBACK
- htslib::BAM_CDEL
- htslib::BAM_CDIFF
- htslib::BAM_CEQUAL
- htslib::BAM_CHARD_CLIP
- htslib::BAM_CIGAR_MASK
- htslib::BAM_CIGAR_SHIFT
- htslib::BAM_CIGAR_STR
- htslib::BAM_CIGAR_TYPE
- htslib::BAM_CINS
- htslib::BAM_CMATCH
- htslib::BAM_CPAD
- htslib::BAM_CREF_SKIP
- htslib::BAM_CSOFT_CLIP
- htslib::BAM_FDUP
- htslib::BAM_FMREVERSE
- htslib::BAM_FMUNMAP
- htslib::BAM_FPAIRED
- htslib::BAM_FPROPER_PAIR
- htslib::BAM_FQCFAIL
- htslib::BAM_FREAD1
- htslib::BAM_FREAD2
- htslib::BAM_FREVERSE
- htslib::BAM_FSECONDARY
- htslib::BAM_FSUPPLEMENTARY
- htslib::BAM_FUNMAP
- htslib::BCF1_DIRTY_ALS
- htslib::BCF1_DIRTY_FLT
- htslib::BCF1_DIRTY_ID
- htslib::BCF1_DIRTY_INF
- htslib::BCF_BT_CHAR
- htslib::BCF_BT_FLOAT
- htslib::BCF_BT_INT16
- htslib::BCF_BT_INT32
- htslib::BCF_BT_INT8
- htslib::BCF_BT_NULL
- htslib::BCF_DT_CTG
- htslib::BCF_DT_ID
- htslib::BCF_DT_SAMPLE
- htslib::BCF_ERR_CHAR
- htslib::BCF_ERR_CTG_INVALID
- htslib::BCF_ERR_CTG_UNDEF
- htslib::BCF_ERR_LIMITS
- htslib::BCF_ERR_NCOLS
- htslib::BCF_ERR_TAG_INVALID
- htslib::BCF_ERR_TAG_UNDEF
- htslib::BCF_HL_CTG
- htslib::BCF_HL_FLT
- htslib::BCF_HL_FMT
- htslib::BCF_HL_GEN
- htslib::BCF_HL_INFO
- htslib::BCF_HL_STR
- htslib::BCF_HT_FLAG
- htslib::BCF_HT_INT
- htslib::BCF_HT_REAL
- htslib::BCF_HT_STR
- htslib::BCF_SR_PAIR_ANY
- htslib::BCF_SR_PAIR_BOTH
- htslib::BCF_SR_PAIR_BOTH_REF
- htslib::BCF_SR_PAIR_EXACT
- htslib::BCF_SR_PAIR_INDELS
- htslib::BCF_SR_PAIR_INDEL_REF
- htslib::BCF_SR_PAIR_SNPS
- htslib::BCF_SR_PAIR_SNP_REF
- htslib::BCF_SR_PAIR_SOME
- htslib::BCF_UN_ALL
- htslib::BCF_UN_FLT
- htslib::BCF_UN_FMT
- htslib::BCF_UN_IND
- htslib::BCF_UN_INFO
- htslib::BCF_UN_SHR
- htslib::BCF_UN_STR
- htslib::BCF_VL_A
- htslib::BCF_VL_FIXED
- htslib::BCF_VL_G
- htslib::BCF_VL_R
- htslib::BCF_VL_VAR
- htslib::BC_BASE_MAX
- htslib::BC_DIM_MAX
- htslib::BC_SCALE_MAX
- htslib::BC_STRING_MAX
- htslib::BGZF_BLOCK_SIZE
- htslib::BGZF_ERR_CRC
- htslib::BGZF_ERR_HEADER
- htslib::BGZF_ERR_IO
- htslib::BGZF_ERR_MISUSE
- htslib::BGZF_ERR_MT
- htslib::BGZF_ERR_ZLIB
- htslib::BGZF_MAX_BLOCK_SIZE
- htslib::BIG_ENDIAN
- htslib::BUFSIZ
- htslib::BYTE_ORDER
- htslib::CHARCLASS_NAME_MAX
- htslib::COLLAPSE_ANY
- htslib::COLLAPSE_BOTH
- htslib::COLLAPSE_INDELS
- htslib::COLLAPSE_NONE
- htslib::COLLAPSE_SNPS
- htslib::COLLAPSE_SOME
- htslib::COLL_WEIGHTS_MAX
- htslib::DELAYTIMER_MAX
- htslib::EOF
- htslib::EXIT_FAILURE
- htslib::EXIT_SUCCESS
- htslib::EXPR_NEST_MAX
- htslib::FD_SETSIZE
- htslib::FILENAME_MAX
- htslib::FOPEN_MAX
- htslib::FT_BCF
- htslib::FT_BCF_GZ
- htslib::FT_GZ
- htslib::FT_STDIN
- htslib::FT_UNKN
- htslib::FT_VCF
- htslib::FT_VCF_GZ
- htslib::F_LOCK
- htslib::F_OK
- htslib::F_TEST
- htslib::F_TLOCK
- htslib::F_ULOCK
- htslib::GT_HAPL_A
- htslib::GT_HAPL_R
- htslib::GT_HET_AA
- htslib::GT_HET_RA
- htslib::GT_HOM_AA
- htslib::GT_HOM_RR
- htslib::GT_UNKN
- htslib::HOST_NAME_MAX
- htslib::HTS_ALLOW_UNALIGNED
- htslib::HTS_FMT_BAI
- htslib::HTS_FMT_CRAI
- htslib::HTS_FMT_CSI
- htslib::HTS_FMT_TBI
- htslib::HTS_IDX_NOCOOR
- htslib::HTS_IDX_NONE
- htslib::HTS_IDX_REST
- htslib::HTS_IDX_START
- htslib::HTS_PARSE_THOUSANDS_SEP
- htslib::INT16_MAX
- htslib::INT16_MIN
- htslib::INT32_MAX
- htslib::INT32_MIN
- htslib::INT8_MAX
- htslib::INT8_MIN
- htslib::INTPTR_MAX
- htslib::INTPTR_MIN
- htslib::INT_FAST16_MAX
- htslib::INT_FAST16_MIN
- htslib::INT_FAST32_MAX
- htslib::INT_FAST32_MIN
- htslib::INT_FAST8_MAX
- htslib::INT_FAST8_MIN
- htslib::INT_LEAST16_MAX
- htslib::INT_LEAST16_MIN
- htslib::INT_LEAST32_MAX
- htslib::INT_LEAST32_MIN
- htslib::INT_LEAST8_MAX
- htslib::INT_LEAST8_MIN
- htslib::LINE_MAX
- htslib::LINK_MAX
- htslib::LITTLE_ENDIAN
- htslib::LOGIN_NAME_MAX
- htslib::L_INCR
- htslib::L_SET
- htslib::L_XTND
- htslib::L_ctermid
- htslib::L_tmpnam
- htslib::MAX_CANON
- htslib::MAX_INPUT
- htslib::MAX_MEM_LEVEL
- htslib::MAX_WBITS
- htslib::MB_LEN_MAX
- htslib::MQ_PRIO_MAX
- htslib::NAME_MAX
- htslib::NGROUPS_MAX
- htslib::NR_OPEN
- htslib::PATH_MAX
- htslib::PDP_ENDIAN
- htslib::PIPE_BUF
- htslib::PTHREAD_DESTRUCTOR_ITERATIONS
- htslib::PTHREAD_KEYS_MAX
- htslib::PTHREAD_STACK_MIN
- htslib::PTRDIFF_MAX
- htslib::PTRDIFF_MIN
- htslib::P_tmpdir
- htslib::RAND_MAX
- htslib::RE_DUP_MAX
- htslib::RTSIG_MAX
- htslib::R_OK
- htslib::SAM_FORMAT_VERSION
- htslib::SEEK_CUR
- htslib::SEEK_END
- htslib::SEEK_SET
- htslib::SEM_VALUE_MAX
- htslib::SIG_ATOMIC_MAX
- htslib::SIG_ATOMIC_MIN
- htslib::SIZE_MAX
- htslib::STDERR_FILENO
- htslib::STDIN_FILENO
- htslib::STDOUT_FILENO
- htslib::TBX_GENERIC
- htslib::TBX_MAX_SHIFT
- htslib::TBX_SAM
- htslib::TBX_UCSC
- htslib::TBX_VCF
- htslib::TMP_MAX
- htslib::TTY_NAME_MAX
- htslib::UINT16_MAX
- htslib::UINT32_MAX
- htslib::UINT8_MAX
- htslib::UINTPTR_MAX
- htslib::UINT_FAST16_MAX
- htslib::UINT_FAST32_MAX
- htslib::UINT_FAST8_MAX
- htslib::UINT_LEAST16_MAX
- htslib::UINT_LEAST32_MAX
- htslib::UINT_LEAST8_MAX
- htslib::VCF_BND
- htslib::VCF_INDEL
- htslib::VCF_MNP
- htslib::VCF_OTHER
- htslib::VCF_REF
- htslib::VCF_SNP
- htslib::WCONTINUED
- htslib::WEXITED
- htslib::WINT_MAX
- htslib::WINT_MIN
- htslib::WNOHANG
- htslib::WNOWAIT
- htslib::WSTOPPED
- htslib::WUNTRACED
- htslib::W_OK
- htslib::XATTR_LIST_MAX
- htslib::XATTR_NAME_MAX
- htslib::XATTR_SIZE_MAX
- htslib::X_OK
- htslib::ZLIB_VERNUM
- htslib::ZLIB_VERSION
- htslib::ZLIB_VER_MAJOR
- htslib::ZLIB_VER_MINOR
- htslib::ZLIB_VER_REVISION
- htslib::ZLIB_VER_SUBREVISION
- htslib::Z_ASCII
- htslib::Z_BEST_COMPRESSION
- htslib::Z_BEST_SPEED
- htslib::Z_BINARY
- htslib::Z_BLOCK
- htslib::Z_BUF_ERROR
- htslib::Z_DATA_ERROR
- htslib::Z_DEFAULT_COMPRESSION
- htslib::Z_DEFAULT_STRATEGY
- htslib::Z_DEFLATED
- htslib::Z_ERRNO
- htslib::Z_FILTERED
- htslib::Z_FINISH
- htslib::Z_FIXED
- htslib::Z_FULL_FLUSH
- htslib::Z_HUFFMAN_ONLY
- htslib::Z_MEM_ERROR
- htslib::Z_NEED_DICT
- htslib::Z_NO_COMPRESSION
- htslib::Z_NO_FLUSH
- htslib::Z_NULL
- htslib::Z_OK
- htslib::Z_PARTIAL_FLUSH
- htslib::Z_RLE
- htslib::Z_STREAM_END
- htslib::Z_STREAM_ERROR
- htslib::Z_SYNC_FLUSH
- htslib::Z_TEXT
- htslib::Z_TREES
- htslib::Z_UNKNOWN
- htslib::Z_VERSION_ERROR
- htslib::_ALLOCA_H
- htslib::_ASSERT_H
- htslib::_ATFILE_SOURCE
- htslib::_BITS_BYTESWAP_H
- htslib::_BITS_G_CONFIG_H
- htslib::_BITS_LIBIO_H
- htslib::_BITS_POSIX1_LIM_H
- htslib::_BITS_POSIX2_LIM_H
- htslib::_BITS_POSIX_OPT_H
- htslib::_BITS_PTHREADTYPES_ARCH_H
- htslib::_BITS_PTHREADTYPES_COMMON_H
- htslib::_BITS_STDINT_INTN_H
- htslib::_BITS_STDINT_UINTN_H
- htslib::_BITS_STDIO_LIM_H
- htslib::_BITS_SYSMACROS_H
- htslib::_BITS_TYPESIZES_H
- htslib::_BITS_TYPES_H
- htslib::_BITS_TYPES_LOCALE_T_H
- htslib::_BITS_TYPES___LOCALE_T_H
- htslib::_BITS_UINTN_IDENTITY_H
- htslib::_BITS_WCHAR_H
- htslib::_CS_GNU_LIBC_VERSION
- htslib::_CS_GNU_LIBPTHREAD_VERSION
- htslib::_CS_LFS64_CFLAGS
- htslib::_CS_LFS64_LDFLAGS
- htslib::_CS_LFS64_LIBS
- htslib::_CS_LFS64_LINTFLAGS
- htslib::_CS_LFS_CFLAGS
- htslib::_CS_LFS_LDFLAGS
- htslib::_CS_LFS_LIBS
- htslib::_CS_LFS_LINTFLAGS
- htslib::_CS_PATH
- htslib::_CS_POSIX_V6_ILP32_OFF32_CFLAGS
- htslib::_CS_POSIX_V6_ILP32_OFF32_LDFLAGS
- htslib::_CS_POSIX_V6_ILP32_OFF32_LIBS
- htslib::_CS_POSIX_V6_ILP32_OFF32_LINTFLAGS
- htslib::_CS_POSIX_V6_ILP32_OFFBIG_CFLAGS
- htslib::_CS_POSIX_V6_ILP32_OFFBIG_LDFLAGS
- htslib::_CS_POSIX_V6_ILP32_OFFBIG_LIBS
- htslib::_CS_POSIX_V6_ILP32_OFFBIG_LINTFLAGS
- htslib::_CS_POSIX_V6_LP64_OFF64_CFLAGS
- htslib::_CS_POSIX_V6_LP64_OFF64_LDFLAGS
- htslib::_CS_POSIX_V6_LP64_OFF64_LIBS
- htslib::_CS_POSIX_V6_LP64_OFF64_LINTFLAGS
- htslib::_CS_POSIX_V6_LPBIG_OFFBIG_CFLAGS
- htslib::_CS_POSIX_V6_LPBIG_OFFBIG_LDFLAGS
- htslib::_CS_POSIX_V6_LPBIG_OFFBIG_LIBS
- htslib::_CS_POSIX_V6_LPBIG_OFFBIG_LINTFLAGS
- htslib::_CS_POSIX_V7_ILP32_OFF32_CFLAGS
- htslib::_CS_POSIX_V7_ILP32_OFF32_LDFLAGS
- htslib::_CS_POSIX_V7_ILP32_OFF32_LIBS
- htslib::_CS_POSIX_V7_ILP32_OFF32_LINTFLAGS
- htslib::_CS_POSIX_V7_ILP32_OFFBIG_CFLAGS
- htslib::_CS_POSIX_V7_ILP32_OFFBIG_LDFLAGS
- htslib::_CS_POSIX_V7_ILP32_OFFBIG_LIBS
- htslib::_CS_POSIX_V7_ILP32_OFFBIG_LINTFLAGS
- htslib::_CS_POSIX_V7_LP64_OFF64_CFLAGS
- htslib::_CS_POSIX_V7_LP64_OFF64_LDFLAGS
- htslib::_CS_POSIX_V7_LP64_OFF64_LIBS
- htslib::_CS_POSIX_V7_LP64_OFF64_LINTFLAGS
- htslib::_CS_POSIX_V7_LPBIG_OFFBIG_CFLAGS
- htslib::_CS_POSIX_V7_LPBIG_OFFBIG_LDFLAGS
- htslib::_CS_POSIX_V7_LPBIG_OFFBIG_LIBS
- htslib::_CS_POSIX_V7_LPBIG_OFFBIG_LINTFLAGS
- htslib::_CS_V5_WIDTH_RESTRICTED_ENVS
- htslib::_CS_V6_ENV
- htslib::_CS_V6_WIDTH_RESTRICTED_ENVS
- htslib::_CS_V7_ENV
- htslib::_CS_V7_WIDTH_RESTRICTED_ENVS
- htslib::_CS_XBS5_ILP32_OFF32_CFLAGS
- htslib::_CS_XBS5_ILP32_OFF32_LDFLAGS
- htslib::_CS_XBS5_ILP32_OFF32_LIBS
- htslib::_CS_XBS5_ILP32_OFF32_LINTFLAGS
- htslib::_CS_XBS5_ILP32_OFFBIG_CFLAGS
- htslib::_CS_XBS5_ILP32_OFFBIG_LDFLAGS
- htslib::_CS_XBS5_ILP32_OFFBIG_LIBS
- htslib::_CS_XBS5_ILP32_OFFBIG_LINTFLAGS
- htslib::_CS_XBS5_LP64_OFF64_CFLAGS
- htslib::_CS_XBS5_LP64_OFF64_LDFLAGS
- htslib::_CS_XBS5_LP64_OFF64_LIBS
- htslib::_CS_XBS5_LP64_OFF64_LINTFLAGS
- htslib::_CS_XBS5_LPBIG_OFFBIG_CFLAGS
- htslib::_CS_XBS5_LPBIG_OFFBIG_LDFLAGS
- htslib::_CS_XBS5_LPBIG_OFFBIG_LIBS
- htslib::_CS_XBS5_LPBIG_OFFBIG_LINTFLAGS
- htslib::_DEFAULT_SOURCE
- htslib::_ENDIAN_H
- htslib::_FEATURES_H
- htslib::_GETOPT_CORE_H
- htslib::_GETOPT_POSIX_H
- htslib::_G_BUFSIZ
- htslib::_G_HAVE_MMAP
- htslib::_G_HAVE_MREMAP
- htslib::_G_IO_IO_FILE_VERSION
- htslib::_IOFBF
- htslib::_IOLBF
- htslib::_IONBF
- htslib::_IOS_APPEND
- htslib::_IOS_ATEND
- htslib::_IOS_BIN
- htslib::_IOS_INPUT
- htslib::_IOS_NOCREATE
- htslib::_IOS_NOREPLACE
- htslib::_IOS_OUTPUT
- htslib::_IOS_TRUNC
- htslib::_IO_BAD_SEEN
- htslib::_IO_BOOLALPHA
- htslib::_IO_BUFSIZ
- htslib::_IO_CURRENTLY_PUTTING
- htslib::_IO_DEC
- htslib::_IO_DELETE_DONT_CLOSE
- htslib::_IO_DONT_CLOSE
- htslib::_IO_EOF_SEEN
- htslib::_IO_ERR_SEEN
- htslib::_IO_FIXED
- htslib::_IO_FLAGS2_MMAP
- htslib::_IO_FLAGS2_NOTCANCEL
- htslib::_IO_FLAGS2_USER_WBUF
- htslib::_IO_HEX
- htslib::_IO_INTERNAL
- htslib::_IO_IN_BACKUP
- htslib::_IO_IS_APPENDING
- htslib::_IO_IS_FILEBUF
- htslib::_IO_LEFT
- htslib::_IO_LINE_BUF
- htslib::_IO_LINKED
- htslib::_IO_MAGIC
- htslib::_IO_MAGIC_MASK
- htslib::_IO_NO_READS
- htslib::_IO_NO_WRITES
- htslib::_IO_OCT
- htslib::_IO_RIGHT
- htslib::_IO_SCIENTIFIC
- htslib::_IO_SHOWBASE
- htslib::_IO_SHOWPOINT
- htslib::_IO_SHOWPOS
- htslib::_IO_SKIPWS
- htslib::_IO_STDIO
- htslib::_IO_TIED_PUT_GET
- htslib::_IO_UNBUFFERED
- htslib::_IO_UNIFIED_JUMPTABLES
- htslib::_IO_UNITBUF
- htslib::_IO_UPPERCASE
- htslib::_IO_USER_BUF
- htslib::_IO_USER_LOCK
- htslib::_LFS64_ASYNCHRONOUS_IO
- htslib::_LFS64_LARGEFILE
- htslib::_LFS64_STDIO
- htslib::_LFS_ASYNCHRONOUS_IO
- htslib::_LFS_LARGEFILE
- htslib::_LIBC_LIMITS_H_
- htslib::_OLD_STDIO_MAGIC
- htslib::_PC_2_SYMLINKS
- htslib::_PC_ALLOC_SIZE_MIN
- htslib::_PC_ASYNC_IO
- htslib::_PC_CHOWN_RESTRICTED
- htslib::_PC_FILESIZEBITS
- htslib::_PC_LINK_MAX
- htslib::_PC_MAX_CANON
- htslib::_PC_MAX_INPUT
- htslib::_PC_NAME_MAX
- htslib::_PC_NO_TRUNC
- htslib::_PC_PATH_MAX
- htslib::_PC_PIPE_BUF
- htslib::_PC_PRIO_IO
- htslib::_PC_REC_INCR_XFER_SIZE
- htslib::_PC_REC_MAX_XFER_SIZE
- htslib::_PC_REC_MIN_XFER_SIZE
- htslib::_PC_REC_XFER_ALIGN
- htslib::_PC_SOCK_MAXBUF
- htslib::_PC_SYMLINK_MAX
- htslib::_PC_SYNC_IO
- htslib::_PC_VDISABLE
- htslib::_POSIX2_BC_BASE_MAX
- htslib::_POSIX2_BC_DIM_MAX
- htslib::_POSIX2_BC_SCALE_MAX
- htslib::_POSIX2_BC_STRING_MAX
- htslib::_POSIX2_CHARCLASS_NAME_MAX
- htslib::_POSIX2_CHAR_TERM
- htslib::_POSIX2_COLL_WEIGHTS_MAX
- htslib::_POSIX2_C_BIND
- htslib::_POSIX2_C_DEV
- htslib::_POSIX2_C_VERSION
- htslib::_POSIX2_EXPR_NEST_MAX
- htslib::_POSIX2_LINE_MAX
- htslib::_POSIX2_LOCALEDEF
- htslib::_POSIX2_RE_DUP_MAX
- htslib::_POSIX2_SW_DEV
- htslib::_POSIX2_VERSION
- htslib::_POSIX_ADVISORY_INFO
- htslib::_POSIX_AIO_LISTIO_MAX
- htslib::_POSIX_AIO_MAX
- htslib::_POSIX_ARG_MAX
- htslib::_POSIX_ASYNCHRONOUS_IO
- htslib::_POSIX_ASYNC_IO
- htslib::_POSIX_BARRIERS
- htslib::_POSIX_CHILD_MAX
- htslib::_POSIX_CHOWN_RESTRICTED
- htslib::_POSIX_CLOCKRES_MIN
- htslib::_POSIX_CLOCK_SELECTION
- htslib::_POSIX_CPUTIME
- htslib::_POSIX_C_SOURCE
- htslib::_POSIX_DELAYTIMER_MAX
- htslib::_POSIX_FSYNC
- htslib::_POSIX_HOST_NAME_MAX
- htslib::_POSIX_IPV6
- htslib::_POSIX_JOB_CONTROL
- htslib::_POSIX_LINK_MAX
- htslib::_POSIX_LOGIN_NAME_MAX
- htslib::_POSIX_MAPPED_FILES
- htslib::_POSIX_MAX_CANON
- htslib::_POSIX_MAX_INPUT
- htslib::_POSIX_MEMLOCK
- htslib::_POSIX_MEMLOCK_RANGE
- htslib::_POSIX_MEMORY_PROTECTION
- htslib::_POSIX_MESSAGE_PASSING
- htslib::_POSIX_MONOTONIC_CLOCK
- htslib::_POSIX_MQ_OPEN_MAX
- htslib::_POSIX_MQ_PRIO_MAX
- htslib::_POSIX_NAME_MAX
- htslib::_POSIX_NGROUPS_MAX
- htslib::_POSIX_NO_TRUNC
- htslib::_POSIX_OPEN_MAX
- htslib::_POSIX_PATH_MAX
- htslib::_POSIX_PIPE_BUF
- htslib::_POSIX_PRIORITIZED_IO
- htslib::_POSIX_PRIORITY_SCHEDULING
- htslib::_POSIX_RAW_SOCKETS
- htslib::_POSIX_READER_WRITER_LOCKS
- htslib::_POSIX_REALTIME_SIGNALS
- htslib::_POSIX_REENTRANT_FUNCTIONS
- htslib::_POSIX_REGEXP
- htslib::_POSIX_RE_DUP_MAX
- htslib::_POSIX_RTSIG_MAX
- htslib::_POSIX_SAVED_IDS
- htslib::_POSIX_SEMAPHORES
- htslib::_POSIX_SEM_NSEMS_MAX
- htslib::_POSIX_SEM_VALUE_MAX
- htslib::_POSIX_SHARED_MEMORY_OBJECTS
- htslib::_POSIX_SHELL
- htslib::_POSIX_SIGQUEUE_MAX
- htslib::_POSIX_SOURCE
- htslib::_POSIX_SPAWN
- htslib::_POSIX_SPIN_LOCKS
- htslib::_POSIX_SPORADIC_SERVER
- htslib::_POSIX_SSIZE_MAX
- htslib::_POSIX_STREAM_MAX
- htslib::_POSIX_SYMLINK_MAX
- htslib::_POSIX_SYMLOOP_MAX
- htslib::_POSIX_SYNCHRONIZED_IO
- htslib::_POSIX_THREADS
- htslib::_POSIX_THREAD_ATTR_STACKADDR
- htslib::_POSIX_THREAD_ATTR_STACKSIZE
- htslib::_POSIX_THREAD_CPUTIME
- htslib::_POSIX_THREAD_DESTRUCTOR_ITERATIONS
- htslib::_POSIX_THREAD_KEYS_MAX
- htslib::_POSIX_THREAD_PRIORITY_SCHEDULING
- htslib::_POSIX_THREAD_PRIO_INHERIT
- htslib::_POSIX_THREAD_PRIO_PROTECT
- htslib::_POSIX_THREAD_PROCESS_SHARED
- htslib::_POSIX_THREAD_ROBUST_PRIO_INHERIT
- htslib::_POSIX_THREAD_ROBUST_PRIO_PROTECT
- htslib::_POSIX_THREAD_SAFE_FUNCTIONS
- htslib::_POSIX_THREAD_SPORADIC_SERVER
- htslib::_POSIX_THREAD_THREADS_MAX
- htslib::_POSIX_TIMEOUTS
- htslib::_POSIX_TIMERS
- htslib::_POSIX_TIMER_MAX
- htslib::_POSIX_TRACE
- htslib::_POSIX_TRACE_EVENT_FILTER
- htslib::_POSIX_TRACE_INHERIT
- htslib::_POSIX_TRACE_LOG
- htslib::_POSIX_TTY_NAME_MAX
- htslib::_POSIX_TYPED_MEMORY_OBJECTS
- htslib::_POSIX_TZNAME_MAX
- htslib::_POSIX_V6_LP64_OFF64
- htslib::_POSIX_V6_LPBIG_OFFBIG
- htslib::_POSIX_V7_LP64_OFF64
- htslib::_POSIX_V7_LPBIG_OFFBIG
- htslib::_POSIX_VDISABLE
- htslib::_POSIX_VERSION
- htslib::_SC_2_CHAR_TERM
- htslib::_SC_2_C_BIND
- htslib::_SC_2_C_DEV
- htslib::_SC_2_C_VERSION
- htslib::_SC_2_FORT_DEV
- htslib::_SC_2_FORT_RUN
- htslib::_SC_2_LOCALEDEF
- htslib::_SC_2_PBS
- htslib::_SC_2_PBS_ACCOUNTING
- htslib::_SC_2_PBS_CHECKPOINT
- htslib::_SC_2_PBS_LOCATE
- htslib::_SC_2_PBS_MESSAGE
- htslib::_SC_2_PBS_TRACK
- htslib::_SC_2_SW_DEV
- htslib::_SC_2_UPE
- htslib::_SC_2_VERSION
- htslib::_SC_ADVISORY_INFO
- htslib::_SC_AIO_LISTIO_MAX
- htslib::_SC_AIO_MAX
- htslib::_SC_AIO_PRIO_DELTA_MAX
- htslib::_SC_ARG_MAX
- htslib::_SC_ASYNCHRONOUS_IO
- htslib::_SC_ATEXIT_MAX
- htslib::_SC_AVPHYS_PAGES
- htslib::_SC_BARRIERS
- htslib::_SC_BASE
- htslib::_SC_BC_BASE_MAX
- htslib::_SC_BC_DIM_MAX
- htslib::_SC_BC_SCALE_MAX
- htslib::_SC_BC_STRING_MAX
- htslib::_SC_CHARCLASS_NAME_MAX
- htslib::_SC_CHAR_BIT
- htslib::_SC_CHAR_MAX
- htslib::_SC_CHAR_MIN
- htslib::_SC_CHILD_MAX
- htslib::_SC_CLK_TCK
- htslib::_SC_CLOCK_SELECTION
- htslib::_SC_COLL_WEIGHTS_MAX
- htslib::_SC_CPUTIME
- htslib::_SC_C_LANG_SUPPORT
- htslib::_SC_C_LANG_SUPPORT_R
- htslib::_SC_DELAYTIMER_MAX
- htslib::_SC_DEVICE_IO
- htslib::_SC_DEVICE_SPECIFIC
- htslib::_SC_DEVICE_SPECIFIC_R
- htslib::_SC_EQUIV_CLASS_MAX
- htslib::_SC_EXPR_NEST_MAX
- htslib::_SC_FD_MGMT
- htslib::_SC_FIFO
- htslib::_SC_FILE_ATTRIBUTES
- htslib::_SC_FILE_LOCKING
- htslib::_SC_FILE_SYSTEM
- htslib::_SC_FSYNC
- htslib::_SC_GETGR_R_SIZE_MAX
- htslib::_SC_GETPW_R_SIZE_MAX
- htslib::_SC_HOST_NAME_MAX
- htslib::_SC_INT_MAX
- htslib::_SC_INT_MIN
- htslib::_SC_IOV_MAX
- htslib::_SC_IPV6
- htslib::_SC_JOB_CONTROL
- htslib::_SC_LEVEL1_DCACHE_ASSOC
- htslib::_SC_LEVEL1_DCACHE_LINESIZE
- htslib::_SC_LEVEL1_DCACHE_SIZE
- htslib::_SC_LEVEL1_ICACHE_ASSOC
- htslib::_SC_LEVEL1_ICACHE_LINESIZE
- htslib::_SC_LEVEL1_ICACHE_SIZE
- htslib::_SC_LEVEL2_CACHE_ASSOC
- htslib::_SC_LEVEL2_CACHE_LINESIZE
- htslib::_SC_LEVEL2_CACHE_SIZE
- htslib::_SC_LEVEL3_CACHE_ASSOC
- htslib::_SC_LEVEL3_CACHE_LINESIZE
- htslib::_SC_LEVEL3_CACHE_SIZE
- htslib::_SC_LEVEL4_CACHE_ASSOC
- htslib::_SC_LEVEL4_CACHE_LINESIZE
- htslib::_SC_LEVEL4_CACHE_SIZE
- htslib::_SC_LINE_MAX
- htslib::_SC_LOGIN_NAME_MAX
- htslib::_SC_LONG_BIT
- htslib::_SC_MAPPED_FILES
- htslib::_SC_MB_LEN_MAX
- htslib::_SC_MEMLOCK
- htslib::_SC_MEMLOCK_RANGE
- htslib::_SC_MEMORY_PROTECTION
- htslib::_SC_MESSAGE_PASSING
- htslib::_SC_MONOTONIC_CLOCK
- htslib::_SC_MQ_OPEN_MAX
- htslib::_SC_MQ_PRIO_MAX
- htslib::_SC_MULTI_PROCESS
- htslib::_SC_NETWORKING
- htslib::_SC_NGROUPS_MAX
- htslib::_SC_NL_ARGMAX
- htslib::_SC_NL_LANGMAX
- htslib::_SC_NL_MSGMAX
- htslib::_SC_NL_NMAX
- htslib::_SC_NL_SETMAX
- htslib::_SC_NL_TEXTMAX
- htslib::_SC_NPROCESSORS_CONF
- htslib::_SC_NPROCESSORS_ONLN
- htslib::_SC_NZERO
- htslib::_SC_OPEN_MAX
- htslib::_SC_PAGESIZE
- htslib::_SC_PASS_MAX
- htslib::_SC_PHYS_PAGES
- htslib::_SC_PII
- htslib::_SC_PII_INTERNET
- htslib::_SC_PII_INTERNET_DGRAM
- htslib::_SC_PII_INTERNET_STREAM
- htslib::_SC_PII_OSI
- htslib::_SC_PII_OSI_CLTS
- htslib::_SC_PII_OSI_COTS
- htslib::_SC_PII_OSI_M
- htslib::_SC_PII_SOCKET
- htslib::_SC_PII_XTI
- htslib::_SC_PIPE
- htslib::_SC_POLL
- htslib::_SC_PRIORITIZED_IO
- htslib::_SC_PRIORITY_SCHEDULING
- htslib::_SC_RAW_SOCKETS
- htslib::_SC_READER_WRITER_LOCKS
- htslib::_SC_REALTIME_SIGNALS
- htslib::_SC_REGEXP
- htslib::_SC_REGEX_VERSION
- htslib::_SC_RE_DUP_MAX
- htslib::_SC_RTSIG_MAX
- htslib::_SC_SAVED_IDS
- htslib::_SC_SCHAR_MAX
- htslib::_SC_SCHAR_MIN
- htslib::_SC_SELECT
- htslib::_SC_SEMAPHORES
- htslib::_SC_SEM_NSEMS_MAX
- htslib::_SC_SEM_VALUE_MAX
- htslib::_SC_SHARED_MEMORY_OBJECTS
- htslib::_SC_SHELL
- htslib::_SC_SHRT_MAX
- htslib::_SC_SHRT_MIN
- htslib::_SC_SIGNALS
- htslib::_SC_SIGQUEUE_MAX
- htslib::_SC_SINGLE_PROCESS
- htslib::_SC_SPAWN
- htslib::_SC_SPIN_LOCKS
- htslib::_SC_SPORADIC_SERVER
- htslib::_SC_SSIZE_MAX
- htslib::_SC_SS_REPL_MAX
- htslib::_SC_STREAMS
- htslib::_SC_STREAM_MAX
- htslib::_SC_SYMLOOP_MAX
- htslib::_SC_SYNCHRONIZED_IO
- htslib::_SC_SYSTEM_DATABASE
- htslib::_SC_SYSTEM_DATABASE_R
- htslib::_SC_THREADS
- htslib::_SC_THREAD_ATTR_STACKADDR
- htslib::_SC_THREAD_ATTR_STACKSIZE
- htslib::_SC_THREAD_CPUTIME
- htslib::_SC_THREAD_DESTRUCTOR_ITERATIONS
- htslib::_SC_THREAD_KEYS_MAX
- htslib::_SC_THREAD_PRIORITY_SCHEDULING
- htslib::_SC_THREAD_PRIO_INHERIT
- htslib::_SC_THREAD_PRIO_PROTECT
- htslib::_SC_THREAD_PROCESS_SHARED
- htslib::_SC_THREAD_ROBUST_PRIO_INHERIT
- htslib::_SC_THREAD_ROBUST_PRIO_PROTECT
- htslib::_SC_THREAD_SAFE_FUNCTIONS
- htslib::_SC_THREAD_SPORADIC_SERVER
- htslib::_SC_THREAD_STACK_MIN
- htslib::_SC_THREAD_THREADS_MAX
- htslib::_SC_TIMEOUTS
- htslib::_SC_TIMERS
- htslib::_SC_TIMER_MAX
- htslib::_SC_TRACE
- htslib::_SC_TRACE_EVENT_FILTER
- htslib::_SC_TRACE_EVENT_NAME_MAX
- htslib::_SC_TRACE_INHERIT
- htslib::_SC_TRACE_LOG
- htslib::_SC_TRACE_NAME_MAX
- htslib::_SC_TRACE_SYS_MAX
- htslib::_SC_TRACE_USER_EVENT_MAX
- htslib::_SC_TTY_NAME_MAX
- htslib::_SC_TYPED_MEMORY_OBJECTS
- htslib::_SC_TZNAME_MAX
- htslib::_SC_T_IOV_MAX
- htslib::_SC_UCHAR_MAX
- htslib::_SC_UINT_MAX
- htslib::_SC_UIO_MAXIOV
- htslib::_SC_ULONG_MAX
- htslib::_SC_USER_GROUPS
- htslib::_SC_USER_GROUPS_R
- htslib::_SC_USHRT_MAX
- htslib::_SC_V6_ILP32_OFF32
- htslib::_SC_V6_ILP32_OFFBIG
- htslib::_SC_V6_LP64_OFF64
- htslib::_SC_V6_LPBIG_OFFBIG
- htslib::_SC_V7_ILP32_OFF32
- htslib::_SC_V7_ILP32_OFFBIG
- htslib::_SC_V7_LP64_OFF64
- htslib::_SC_V7_LPBIG_OFFBIG
- htslib::_SC_VERSION
- htslib::_SC_WORD_BIT
- htslib::_SC_XBS5_ILP32_OFF32
- htslib::_SC_XBS5_ILP32_OFFBIG
- htslib::_SC_XBS5_LP64_OFF64
- htslib::_SC_XBS5_LPBIG_OFFBIG
- htslib::_SC_XOPEN_CRYPT
- htslib::_SC_XOPEN_ENH_I18N
- htslib::_SC_XOPEN_LEGACY
- htslib::_SC_XOPEN_REALTIME
- htslib::_SC_XOPEN_REALTIME_THREADS
- htslib::_SC_XOPEN_SHM
- htslib::_SC_XOPEN_STREAMS
- htslib::_SC_XOPEN_UNIX
- htslib::_SC_XOPEN_VERSION
- htslib::_SC_XOPEN_XCU_VERSION
- htslib::_SC_XOPEN_XPG2
- htslib::_SC_XOPEN_XPG3
- htslib::_SC_XOPEN_XPG4
- htslib::_STDC_PREDEF_H
- htslib::_STDINT_H
- htslib::_STDIO_H
- htslib::_STDLIB_H
- htslib::_STRINGS_H
- htslib::_STRING_H
- htslib::_SYS_CDEFS_H
- htslib::_SYS_SELECT_H
- htslib::_SYS_SYSMACROS_H
- htslib::_SYS_TYPES_H
- htslib::_THREAD_SHARED_TYPES_H
- htslib::_UNISTD_H
- htslib::_XBS5_LP64_OFF64
- htslib::_XBS5_LPBIG_OFFBIG
- htslib::_XOPEN_CRYPT
- htslib::_XOPEN_ENH_I18N
- htslib::_XOPEN_LEGACY
- htslib::_XOPEN_REALTIME
- htslib::_XOPEN_REALTIME_THREADS
- htslib::_XOPEN_SHM
- htslib::_XOPEN_UNIX
- htslib::_XOPEN_VERSION
- htslib::_XOPEN_XCU_VERSION
- htslib::_XOPEN_XPG2
- htslib::_XOPEN_XPG3
- htslib::_XOPEN_XPG4
- htslib::__BIG_ENDIAN
- htslib::__BIT_TYPES_DEFINED__
- htslib::__BYTE_ORDER
- htslib::__ENUM_IDTYPE_T
- htslib::__FD_SETSIZE
- htslib::__FD_ZERO_STOS
- htslib::__FILE_defined
- htslib::__FLOAT_WORD_ORDER
- htslib::__GLIBC_MINOR__
- htslib::__GLIBC_USE_DEPRECATED_GETS
- htslib::__GLIBC_USE_IEC_60559_BFP_EXT
- htslib::__GLIBC_USE_IEC_60559_FUNCS_EXT
- htslib::__GLIBC_USE_IEC_60559_TYPES_EXT
- htslib::__GLIBC_USE_LIB_EXT2
- htslib::__GLIBC__
- htslib::__GNUC_VA_LIST
- htslib::__GNU_LIBRARY__
- htslib::__HAVE_DISTINCT_FLOAT128
- htslib::__HAVE_DISTINCT_FLOAT128X
- htslib::__HAVE_DISTINCT_FLOAT16
- htslib::__HAVE_DISTINCT_FLOAT32
- htslib::__HAVE_DISTINCT_FLOAT32X
- htslib::__HAVE_DISTINCT_FLOAT64
- htslib::__HAVE_DISTINCT_FLOAT64X
- htslib::__HAVE_FLOAT128
- htslib::__HAVE_FLOAT128X
- htslib::__HAVE_FLOAT16
- htslib::__HAVE_FLOAT32
- htslib::__HAVE_FLOAT32X
- htslib::__HAVE_FLOAT64
- htslib::__HAVE_FLOAT64X
- htslib::__HAVE_FLOAT64X_LONG_DOUBLE
- htslib::__HAVE_FLOATN_NOT_TYPEDEF
- htslib::__HAVE_GENERIC_SELECTION
- htslib::__ILP32_OFF32_CFLAGS
- htslib::__ILP32_OFF32_LDFLAGS
- htslib::__ILP32_OFFBIG_CFLAGS
- htslib::__ILP32_OFFBIG_LDFLAGS
- htslib::__INO_T_MATCHES_INO64_T
- htslib::__LITTLE_ENDIAN
- htslib::__LP64_OFF64_CFLAGS
- htslib::__LP64_OFF64_LDFLAGS
- htslib::__OFF_T_MATCHES_OFF64_T
- htslib::__PDP_ENDIAN
- htslib::__POSIX2_THIS_VERSION
- htslib::__PTHREAD_MUTEX_HAVE_PREV
- htslib::__PTHREAD_MUTEX_LOCK_ELISION
- htslib::__PTHREAD_MUTEX_NUSERS_AFTER_KIND
- htslib::__PTHREAD_MUTEX_USE_UNION
- htslib::__PTHREAD_RWLOCK_INT_FLAGS_SHARED
- htslib::__RLIM_T_MATCHES_RLIM64_T
- htslib::__SIZEOF_PTHREAD_ATTR_T
- htslib::__SIZEOF_PTHREAD_BARRIERATTR_T
- htslib::__SIZEOF_PTHREAD_BARRIER_T
- htslib::__SIZEOF_PTHREAD_CONDATTR_T
- htslib::__SIZEOF_PTHREAD_COND_T
- htslib::__SIZEOF_PTHREAD_MUTEXATTR_T
- htslib::__SIZEOF_PTHREAD_MUTEX_T
- htslib::__SIZEOF_PTHREAD_RWLOCKATTR_T
- htslib::__SIZEOF_PTHREAD_RWLOCK_T
- htslib::__STDC_IEC_559_COMPLEX__
- htslib::__STDC_IEC_559__
- htslib::__STDC_ISO_10646__
- htslib::__STDC_NO_THREADS__
- htslib::__SYSCALL_WORDSIZE
- htslib::__USE_ATFILE
- htslib::__USE_FORTIFY_LEVEL
- htslib::__USE_ISOC11
- htslib::__USE_ISOC95
- htslib::__USE_ISOC99
- htslib::__USE_MISC
- htslib::__USE_POSIX
- htslib::__USE_POSIX199309
- htslib::__USE_POSIX199506
- htslib::__USE_POSIX2
- htslib::__USE_POSIX_IMPLICITLY
- htslib::__USE_XOPEN2K
- htslib::__USE_XOPEN2K8
- htslib::__WALL
- htslib::__WCLONE
- htslib::__WCOREFLAG
- htslib::__WNOTHREAD
- htslib::__WORDSIZE
- htslib::__WORDSIZE_TIME64_COMPAT32
- htslib::__W_CONTINUED
- htslib::____FILE_defined
- htslib::____mbstate_t_defined
- htslib::__clock_t_defined
- htslib::__clockid_t_defined
- htslib::__codecvt_result___codecvt_error
- htslib::__codecvt_result___codecvt_noconv
- htslib::__codecvt_result___codecvt_ok
- htslib::__codecvt_result___codecvt_partial
- htslib::__glibc_c99_flexarr_available
- htslib::__have_pthread_attr_t
- htslib::__ldiv_t_defined
- htslib::__lldiv_t_defined
- htslib::__sigset_t_defined
- htslib::__time_t_defined
- htslib::__timer_t_defined
- htslib::__timespec_defined
- htslib::__timeval_defined
- htslib::bcf_gt_missing
- htslib::bcf_int16_missing
- htslib::bcf_int16_vector_end
- htslib::bcf_int32_missing
- htslib::bcf_int32_vector_end
- htslib::bcf_int8_missing
- htslib::bcf_int8_vector_end
- htslib::bcf_sr_error_api_usage_error
- htslib::bcf_sr_error_bcf_read_error
- htslib::bcf_sr_error_file_type_error
- htslib::bcf_sr_error_header_error
- htslib::bcf_sr_error_idx_load_failed
- htslib::bcf_sr_error_no_eof
- htslib::bcf_sr_error_no_memory
- htslib::bcf_sr_error_not_bgzf
- htslib::bcf_sr_error_open_failed
- htslib::bcf_sr_error_vcf_parse_error
- htslib::bcf_sr_opt_t_BCF_SR_PAIR_LOGIC
- htslib::bcf_sr_opt_t_BCF_SR_REQUIRE_IDX
- htslib::bcf_str_missing
- htslib::bcf_str_vector_end
- htslib::cram_block_method_BZIP2
- htslib::cram_block_method_ERROR
- htslib::cram_block_method_GZIP
- htslib::cram_block_method_GZIP_RLE
- htslib::cram_block_method_LZMA
- htslib::cram_block_method_RANS
- htslib::cram_block_method_RANS0
- htslib::cram_block_method_RANS1
- htslib::cram_block_method_RAW
- htslib::cram_content_type_COMPRESSION_HEADER
- htslib::cram_content_type_CORE
- htslib::cram_content_type_CT_ERROR
- htslib::cram_content_type_EXTERNAL
- htslib::cram_content_type_FILE_HEADER
- htslib::cram_content_type_MAPPED_SLICE
- htslib::cram_content_type_UNMAPPED_SLICE
- htslib::htsCompression_bgzf
- htslib::htsCompression_compression_maximum
- htslib::htsCompression_custom
- htslib::htsCompression_gzip
- htslib::htsCompression_no_compression
- htslib::htsExactFormat_bai
- htslib::htsExactFormat_bam
- htslib::htsExactFormat_bcf
- htslib::htsExactFormat_bed
- htslib::htsExactFormat_binary_format
- htslib::htsExactFormat_crai
- htslib::htsExactFormat_cram
- htslib::htsExactFormat_csi
- htslib::htsExactFormat_format_maximum
- htslib::htsExactFormat_gzi
- htslib::htsExactFormat_htsget
- htslib::htsExactFormat_json
- htslib::htsExactFormat_sam
- htslib::htsExactFormat_tbi
- htslib::htsExactFormat_text_format
- htslib::htsExactFormat_unknown_format
- htslib::htsExactFormat_vcf
- htslib::htsFormatCategory_category_maximum
- htslib::htsFormatCategory_index_file
- htslib::htsFormatCategory_region_list
- htslib::htsFormatCategory_sequence_data
- htslib::htsFormatCategory_unknown_category
- htslib::htsFormatCategory_variant_data
- htslib::htsLogLevel_HTS_LOG_DEBUG
- htslib::htsLogLevel_HTS_LOG_ERROR
- htslib::htsLogLevel_HTS_LOG_INFO
- htslib::htsLogLevel_HTS_LOG_OFF
- htslib::htsLogLevel_HTS_LOG_TRACE
- htslib::htsLogLevel_HTS_LOG_WARNING
- htslib::hts_fmt_option_CRAM_OPT_BASES_PER_SLICE
- htslib::hts_fmt_option_CRAM_OPT_DECODE_MD
- htslib::hts_fmt_option_CRAM_OPT_EMBED_REF
- htslib::hts_fmt_option_CRAM_OPT_IGNORE_MD5
- htslib::hts_fmt_option_CRAM_OPT_LOSSY_NAMES
- htslib::hts_fmt_option_CRAM_OPT_MULTI_SEQ_PER_SLICE
- htslib::hts_fmt_option_CRAM_OPT_NO_REF
- htslib::hts_fmt_option_CRAM_OPT_NTHREADS
- htslib::hts_fmt_option_CRAM_OPT_PREFIX
- htslib::hts_fmt_option_CRAM_OPT_RANGE
- htslib::hts_fmt_option_CRAM_OPT_REFERENCE
- htslib::hts_fmt_option_CRAM_OPT_REQUIRED_FIELDS
- htslib::hts_fmt_option_CRAM_OPT_SEQS_PER_SLICE
- htslib::hts_fmt_option_CRAM_OPT_SHARED_REF
- htslib::hts_fmt_option_CRAM_OPT_SLICES_PER_CONTAINER
- htslib::hts_fmt_option_CRAM_OPT_STORE_MD
- htslib::hts_fmt_option_CRAM_OPT_STORE_NM
- htslib::hts_fmt_option_CRAM_OPT_THREAD_POOL
- htslib::hts_fmt_option_CRAM_OPT_USE_BZIP2
- htslib::hts_fmt_option_CRAM_OPT_USE_LZMA
- htslib::hts_fmt_option_CRAM_OPT_USE_RANS
- htslib::hts_fmt_option_CRAM_OPT_VERBOSITY
- htslib::hts_fmt_option_CRAM_OPT_VERSION
- htslib::hts_fmt_option_HTS_OPT_BLOCK_SIZE
- htslib::hts_fmt_option_HTS_OPT_CACHE_SIZE
- htslib::hts_fmt_option_HTS_OPT_COMPRESSION_LEVEL
- htslib::hts_fmt_option_HTS_OPT_NTHREADS
- htslib::hts_fmt_option_HTS_OPT_THREAD_POOL
- htslib::idtype_t_P_ALL
- htslib::idtype_t_P_PGID
- htslib::idtype_t_P_PID
- htslib::sam_fields_SAM_AUX
- htslib::sam_fields_SAM_CIGAR
- htslib::sam_fields_SAM_FLAG
- htslib::sam_fields_SAM_MAPQ
- htslib::sam_fields_SAM_PNEXT
- htslib::sam_fields_SAM_POS
- htslib::sam_fields_SAM_QNAME
- htslib::sam_fields_SAM_QUAL
- htslib::sam_fields_SAM_RGAUX
- htslib::sam_fields_SAM_RNAME
- htslib::sam_fields_SAM_RNEXT
- htslib::sam_fields_SAM_SEQ
- htslib::sam_fields_SAM_TLEN