Module rust_htslib::htslib

Modules

vcf
vcfutils

Structs

Struct_BGZF
Struct_Unnamed1
Struct_Unnamed2
Struct_Unnamed4
Struct_Unnamed5
Struct_Unnamed6
Struct_Unnamed7
Struct_Unnamed8
Struct_Unnamed9
Struct_Unnamed10
Struct___kstring_t
Struct_htsFormat
Union_Unnamed3

Enums

Struct___bam_mplp_t
Struct___bam_plp_t
Struct___hts_idx_t
Struct_cram_fd
Struct_hFILE

Constants

CRAM_OPT_DECODE_MD
CRAM_OPT_EMBED_REF
CRAM_OPT_IGNORE_MD5
CRAM_OPT_MULTI_SEQ_PER_SLICE
CRAM_OPT_NO_REF
CRAM_OPT_NTHREADS
CRAM_OPT_PREFIX
CRAM_OPT_RANGE
CRAM_OPT_REFERENCE
CRAM_OPT_REQUIRED_FIELDS
CRAM_OPT_SEQS_PER_SLICE
CRAM_OPT_SHARED_REF
CRAM_OPT_SLICES_PER_CONTAINER
CRAM_OPT_THREAD_POOL
CRAM_OPT_USE_BZIP2
CRAM_OPT_USE_LZMA
CRAM_OPT_USE_RANS
CRAM_OPT_VERBOSITY
CRAM_OPT_VERSION
HTS_FMT_BAI
SAM_AUX
SAM_CIGAR
SAM_FLAG
SAM_MAPQ
SAM_PNEXT
SAM_POS
SAM_QNAME
SAM_QUAL
SAM_RGAUX
SAM_RNAME
SAM_RNEXT
SAM_SEQ
SAM_TLEN
bai
bam
bcf
bed
bgzf
binary_format
category_maximum
compression_maximum
crai
cram
csi
custom
format_maximum
gzi
gzip
index_file
no_compression
region_list
sam
sequence_data
tbi
text_format
unknown_category
unknown_format
variant_data
vcf

Statics

hts_verbose
seq_nt16_int
seq_nt16_str
seq_nt16_table

Functions

bam_aux2A⚠
bam_aux2Z⚠
bam_aux2f⚠
bam_aux2i⚠
bam_aux_append⚠
bam_aux_del⚠
bam_aux_get⚠
bam_cigar2qlen⚠
bam_cigar2rlen⚠
bam_copy1⚠
bam_destroy1⚠
bam_dup1⚠
bam_endpos⚠
bam_flag2str⚠
bam_hdr_destroy⚠
bam_hdr_dup⚠
bam_hdr_init⚠
bam_hdr_read⚠
bam_hdr_write⚠
bam_index_build⚠
bam_init1⚠
bam_mplp_auto⚠
bam_mplp_destroy⚠
bam_mplp_init⚠
bam_mplp_init_overlaps⚠
bam_mplp_set_maxcnt⚠
bam_name2id⚠
bam_plp_auto⚠
bam_plp_destroy⚠
bam_plp_init⚠
bam_plp_next⚠
bam_plp_push⚠
bam_plp_reset⚠
bam_plp_set_maxcnt⚠
bam_read1⚠
bam_str2flag⚠
bam_write1⚠
bgzf_close⚠
bgzf_mt⚠
bgzf_open⚠
bgzf_seek⚠
bgzf_tell
hts_close⚠
hts_detect_format⚠
hts_file_type⚠
hts_format_description⚠
hts_get_format⚠
hts_getline⚠
hts_hopen⚠
hts_idx_destroy⚠
hts_idx_finish⚠
hts_idx_get_meta⚠
hts_idx_get_n_no_coor⚠
hts_idx_get_stat⚠
hts_idx_init⚠
hts_idx_load⚠
hts_idx_push⚠
hts_idx_save⚠
hts_idx_seqnames⚠
hts_idx_set_meta⚠
hts_itr_destroy⚠
hts_itr_next⚠
hts_itr_query⚠
hts_itr_querys⚠
hts_open⚠
hts_parse_reg⚠
hts_readlines⚠
hts_readlist⚠
hts_set_fai_filename⚠
hts_set_opt⚠
hts_set_threads⚠
hts_version⚠
sam_format1⚠
sam_hdr_parse⚠
sam_hdr_read⚠
sam_hdr_write⚠
sam_index_load⚠
sam_itr_queryi⚠
sam_itr_querys⚠
sam_open_mode⚠
sam_parse1⚠
sam_read1⚠
sam_write1⚠

Type Definitions

BGZF
Enum_cram_option
Enum_htsCompression
Enum_htsExactFormat
Enum_htsFormatCategory
Enum_sam_fields
bam1_core_t
bam1_t
bam_hdr_t
bam_mplp_t
bam_pileup1_t
bam_plp_auto_f
bam_plp_t
htsFile
htsFormat
hts_id2name_f
hts_idx_t
hts_itr_query_func
hts_itr_t
hts_name2id_f
hts_pair64_t
hts_readrec_func
int16_t
int32_t
int64_t
int8_t
int_fast16_t
int_fast32_t
int_fast64_t
int_fast8_t
int_least16_t
int_least32_t
int_least64_t
int_least8_t
intmax_t
intptr_t
kstring_t
ptrdiff_t
samFile
size_t
uint16_t
uint32_t
uint64_t
uint8_t
uint_fast16_t
uint_fast32_t
uint_fast64_t
uint_fast8_t
uint_least16_t
uint_least32_t
uint_least64_t
uint_least8_t
uintmax_t
uintptr_t
wchar_t