Crate rumi_lib

Source

Structs§

  • Config
  • Group
    A group of reads that have been deduplicated
  • Node
  • Position
  • ReadFreq
    A Read or Reads and the number of times that read signature has been seen Read signature meaning Position + UMI
  • Stats

Enums§

  • ReadCollection
    Abstraction so ReadFreq can hold a single best read for it’s read signature or hold all reads for it’s read signature (used for –group_only).
  • RecordEvent

Functions§

  • build_graph
    Create a graph from the UmiMap TODO: Inline?
  • check_record
  • connect_graph
    Create the connections between the umis via an all vs all comparison. A Connection will only be formed from a larger node to a smaller node. Larger being defined as node_a >= 2x node_b - 1, the provides the directionality. TODO: Keep a seen list here instead of later? Some connections will be redundant.
  • group_reads
    Group reads together based on their positions.
  • run_dedup
    The main function to coordinate the deduplication process
  • run_group

Type Aliases§