rumdl_lib/

lib.rs

#![warn(unreachable_pub)]
#![warn(clippy::pedantic)]
// Style-only pedantic lints we don't enforce. Each one generated >5 occurrences
// that were either deliberate design choices or too noisy for the value
// delivered. Categories that flag potential bugs stay on.
#![allow(clippy::doc_markdown)]
#![allow(clippy::must_use_candidate)]
#![allow(clippy::missing_errors_doc)]
#![allow(clippy::missing_panics_doc)]
#![allow(clippy::too_many_lines)]
#![allow(clippy::if_not_else)]
#![allow(clippy::similar_names)]
#![allow(clippy::wildcard_imports)]
#![allow(clippy::case_sensitive_file_extension_comparisons)]
#![allow(clippy::doc_link_with_quotes)]
#![allow(clippy::needless_raw_string_hashes)]
#![allow(clippy::trivially_copy_pass_by_ref)]
#![allow(clippy::struct_excessive_bools)]
#![allow(clippy::fn_params_excessive_bools)]
#![allow(clippy::elidable_lifetime_names)]
#![allow(clippy::return_self_not_must_use)]
#![allow(clippy::redundant_else)]
#![allow(clippy::single_match_else)]
#![allow(clippy::needless_continue)]
#![allow(clippy::semicolon_if_nothing_returned)]
#![allow(clippy::ignored_unit_patterns)]
#![allow(clippy::unreadable_literal)]
#![allow(clippy::implicit_hasher)]
#![allow(clippy::ref_option)]
#![allow(clippy::struct_field_names)]
#![allow(clippy::unused_self)]
#![allow(clippy::unnested_or_patterns)]
#![allow(clippy::cast_precision_loss)]
#![allow(clippy::cast_sign_loss)]
#![allow(clippy::cast_possible_wrap)]
#![allow(clippy::cast_possible_truncation)]
#![allow(clippy::cast_lossless)]
#![allow(clippy::items_after_statements)]
#![allow(clippy::match_same_arms)]
#![allow(clippy::format_push_string)]
// Test smoke-constructors like `let _formatter = Foo;` fire this lint,
// but are acceptable: they verify the type exists without asserting behavior.
#![allow(clippy::no_effect_underscore_binding)]
// Style-only: `Default::default()` vs `T::default()`. Both are readable.
#![allow(clippy::default_trait_access)]
// Style-only: `"".to_string()` vs `String::new()`. Tests favor the former
// for symmetry with non-empty string literals.
#![allow(clippy::manual_string_new)]

pub mod code_block_tools;
pub mod config;
pub mod discovery;
pub mod doc_comment_lint;
pub mod document_run;
pub mod embedded_lint;
pub mod exit_codes;
pub mod filtered_lines;
pub mod fix_coordinator;
pub mod inline_config;
pub mod linguist_data;
pub mod lint_context;
pub mod markdownlint_config;
pub mod merge_conflict;
pub mod profiling;
pub mod rule;
#[cfg(feature = "colored")]
pub mod vscode;
pub mod workspace_index;
#[macro_use]
pub mod rule_config;
#[macro_use]
pub mod rule_config_serde;
pub mod rules;
pub mod types;
pub mod utils;

// Native-only modules (require tokio, tower-lsp, etc.)
#[cfg(feature = "native")]
pub mod lsp;
#[cfg(feature = "colored")]
pub mod output;

// WASM module
#[cfg(feature = "wasm")]
pub mod wasm;

pub use rules::heading_utils::HeadingStyle;
pub use rules::*;

pub use crate::lint_context::{LineInfo, LintContext, ListItemInfo};
use crate::rule::{LintResult, Rule, RuleCategory};
use crate::utils::calculate_indentation_width_default;
#[cfg(not(target_arch = "wasm32"))]
use std::time::Instant;

/// Content characteristics for efficient rule filtering
#[derive(Debug, Default)]
struct ContentCharacteristics {
    has_headings: bool,    // # or setext headings
    has_lists: bool,       // *, -, +, 1. etc
    has_links: bool,       // [text](url) or [text][ref]
    has_code: bool,        // ``` or ~~~ or indented code
    has_emphasis: bool,    // * or _ for emphasis
    has_html: bool,        // < > tags
    has_tables: bool,      // | pipes
    has_blockquotes: bool, // > markers
    has_images: bool,      // ![alt](url)
}

/// Check if a line has enough leading whitespace to be an indented code block.
/// Indented code blocks require 4+ columns of leading whitespace (with proper tab expansion).
fn has_potential_indented_code_indent(line: &str) -> bool {
    calculate_indentation_width_default(line) >= 4
}

impl ContentCharacteristics {
    fn analyze(content: &str) -> Self {
        let mut chars = Self { ..Default::default() };

        // Quick single-pass analysis
        let mut has_atx_heading = false;
        let mut has_setext_heading = false;

        for line in content.lines() {
            let trimmed = line.trim();

            // Headings: ATX (#) or Setext (underlines). A blockquoted ATX
            // heading (`> ## Title`) still emits a fragment anchor, so rules
            // like MD051/MD080 must run for blockquote-only documents too.
            // Stripping `>`/space/tab is a coarse, deliberately
            // over-inclusive prefilter check (it must never skip a rule that
            // has work; `parse_blockquote_prefix` also accepts a tab marker).
            if !has_atx_heading
                && (trimmed.starts_with('#') || trimmed.trim_start_matches(['>', ' ', '\t']).starts_with('#'))
            {
                has_atx_heading = true;
            }
            // A setext underline can be a single `=` or `-`, and one inside a
            // blockquote follows the quote's markers.
            let underline = trimmed.trim_start_matches(['>', ' ', '\t']);
            if !has_setext_heading && !underline.is_empty() && underline.chars().all(|c| c == '=' || c == '-') {
                has_setext_heading = true;
            }

            // Quick character-based detection (more efficient than regex)
            // Include patterns without spaces to enable user-intention detection (MD030)
            if !chars.has_lists
                && (line.contains("* ")
                    || line.contains("- ")
                    || line.contains("+ ")
                    || trimmed.starts_with("* ")
                    || trimmed.starts_with("- ")
                    || trimmed.starts_with("+ ")
                    || trimmed.starts_with('*')
                    || trimmed.starts_with('-')
                    || trimmed.starts_with('+'))
            {
                chars.has_lists = true;
            }
            // Ordered lists: a line whose text starts with a digit (a marker may
            // be indented), or a blockquote line holding one, and either marker
            // delimiter (`.` or `)`) after it
            if !chars.has_lists
                && ((trimmed.chars().next().is_some_and(|c| c.is_ascii_digit()) && trimmed.contains(['.', ')']))
                    || (trimmed.starts_with('>')
                        && trimmed.chars().any(|c| c.is_ascii_digit())
                        && trimmed.contains(['.', ')'])))
            {
                chars.has_lists = true;
            }
            if !chars.has_links
                && (line.contains('[')
                    || line.contains("http://")
                    || line.contains("https://")
                    || line.contains("ftp://")
                    || line.contains("www."))
            {
                chars.has_links = true;
            }
            if !chars.has_images && line.contains("![") {
                chars.has_images = true;
            }
            if !chars.has_code
                && (line.contains('`') || line.contains("~~~") || has_potential_indented_code_indent(line))
            {
                chars.has_code = true;
            }
            if !chars.has_emphasis && (line.contains('*') || line.contains('_')) {
                chars.has_emphasis = true;
            }
            if !chars.has_html && line.contains('<') {
                chars.has_html = true;
            }
            if !chars.has_tables && line.contains('|') {
                chars.has_tables = true;
            }
            if !chars.has_blockquotes && line.starts_with('>') {
                chars.has_blockquotes = true;
            }
        }

        chars.has_headings = has_atx_heading || has_setext_heading;
        chars
    }

    /// Check if a rule should be skipped based on content characteristics
    fn should_skip_rule(&self, rule: &dyn Rule) -> bool {
        match rule.category() {
            RuleCategory::Heading => !self.has_headings,
            RuleCategory::List => !self.has_lists,
            RuleCategory::Link => !self.has_links && !self.has_images,
            RuleCategory::Image => !self.has_images,
            RuleCategory::CodeBlock => !self.has_code,
            RuleCategory::Html => !self.has_html,
            RuleCategory::Emphasis => !self.has_emphasis,
            RuleCategory::Blockquote => !self.has_blockquotes,
            RuleCategory::Table => !self.has_tables,
            // Always check these categories as they apply to all content
            RuleCategory::Whitespace | RuleCategory::FrontMatter | RuleCategory::Other => false,
        }
    }
}

/// Compute content hash for incremental indexing change detection
///
/// Uses blake3 for native builds (fast, cryptographic-strength hash)
/// Falls back to std::hash for WASM builds
#[cfg(feature = "native")]
fn compute_content_hash(content: &str) -> String {
    #[cfg(feature = "profiling")]
    let start = std::time::Instant::now();
    let hash = blake3::hash(content.as_bytes()).to_hex().to_string();
    #[cfg(feature = "profiling")]
    profiling::record_duration("index: hash content", start.elapsed());
    hash
}

/// Compute content hash for WASM builds using std::hash
#[cfg(not(feature = "native"))]
fn compute_content_hash(content: &str) -> String {
    use std::hash::{DefaultHasher, Hash, Hasher};
    let mut hasher = DefaultHasher::new();
    content.hash(&mut hasher);
    format!("{:016x}", hasher.finish())
}

/// Lint a file against the given rules with intelligent rule filtering
/// Assumes the provided `rules` vector contains the final,
/// configured, and filtered set of rules to be executed.
pub fn lint(
    content: &str,
    rules: &[Box<dyn Rule>],
    verbose: bool,
    flavor: crate::config::MarkdownFlavor,
    source_file: Option<std::path::PathBuf>,
    config: Option<&crate::config::Config>,
) -> LintResult {
    let (result, _file_index) = lint_and_index(content, rules, verbose, flavor, source_file, config);
    result
}

/// Build FileIndex only (no linting) for cross-file analysis on cache hits
///
/// This is a lightweight function that only builds the FileIndex without running
/// any rules. Used when we have a cache hit but still need the FileIndex for
/// cross-file validation.
///
/// This avoids the overhead of re-running all rules when only the index data is needed.
pub fn build_file_index_only(
    content: &str,
    rules: &[Box<dyn Rule>],
    flavor: crate::config::MarkdownFlavor,
    source_file: Option<std::path::PathBuf>,
) -> crate::workspace_index::FileIndex {
    build_file_index_only_with_config(content, rules, flavor, source_file, &crate::config::Config::default())
}

/// Build an index using the document's conflict-marker configuration.
/// This keeps cache hits and workspace scans consistent with ordinary linting.
pub fn build_file_index_only_with_config(
    content: &str,
    rules: &[Box<dyn Rule>],
    flavor: crate::config::MarkdownFlavor,
    source_file: Option<std::path::PathBuf>,
    config: &crate::config::Config,
) -> crate::workspace_index::FileIndex {
    // Compute content hash for change detection
    let content_hash = compute_content_hash(content);
    let mut file_index = crate::workspace_index::FileIndex::with_hash(content_hash);

    if crate::merge_conflict::detect_configured(content, config, source_file.as_deref()).is_some() {
        return file_index;
    }

    // Early return for empty content
    if content.is_empty() {
        return file_index;
    }

    // Parse LintContext once with the provided flavor
    let lint_ctx = time_function!(
        "index: parse lint context",
        crate::lint_context::LintContext::new(content, flavor, source_file)
    );

    // Export inline disable data to the FileIndex so cross-file checks honor
    // `<!-- rumdl-disable -->` blocks on the lint-cache fast path, exactly as
    // lint_and_index does on the normal path.
    let (file_disabled, persistent_transitions, line_disabled) = lint_ctx.inline_config().export_for_file_index();
    file_index.file_disabled_rules = file_disabled;
    file_index.persistent_transitions = persistent_transitions;
    file_index.line_disabled_rules = line_disabled;

    // Only call contribute_to_index for cross-file rules (no rule checking!)
    time_section!("index: contribute cross-file data", {
        for rule in rules {
            if rule.cross_file_scope() == crate::rule::CrossFileScope::Workspace {
                rule.contribute_to_index(&lint_ctx, &mut file_index);
            }
        }
    });

    file_index
}

/// Rewrite every fix replacement in the document's own line ending.
///
/// Rules build a fix on LF text, so a line ending they insert is `\n`, and the
/// CLI really does hand them LF: it normalises a file on read and restores the
/// ending on write. The LSP and wasm lint the editor's or host's text as it is,
/// and a quick fix that inserted a bare `\n` into a CRLF document left it with
/// mixed endings. Conforming here, where every rule's warnings meet, settles it
/// for every caller and every rule at once. A document with mixed endings has no
/// single convention to conform to and keeps the fix as the rule wrote it.
fn conform_fix_line_endings(content: &str, warnings: &mut [crate::rule::LintWarning]) {
    if !content.contains('\r') || crate::utils::detect_line_ending_enum(content) != crate::utils::LineEnding::Crlf {
        return;
    }
    fn conform(fix: &mut crate::rule::Fix) {
        if fix.replacement.contains('\n') {
            fix.replacement =
                crate::utils::normalize_line_ending(&fix.replacement, crate::utils::LineEnding::Crlf).into_owned();
        }
        for extra in &mut fix.additional_edits {
            conform(extra);
        }
    }
    for fix in warnings.iter_mut().filter_map(|warning| warning.fix.as_mut()) {
        conform(fix);
    }
}

/// Drop the warnings a document silences, and apply any configured severity override
/// to the rest.
///
/// A warning is dropped when it sits in a kramdown extension block or when an inline
/// comment disables its rule somewhere in its range. `suppressed`, when given,
/// collects what the inline comments removed, for the rules that report on them. A
/// kramdown extension block is not an inline comment, so what it drops is left out.
fn retain_reportable_warnings(
    lint_ctx: &crate::lint_context::LintContext,
    config: Option<&crate::config::Config>,
    rule_name: &str,
    rule_warnings: Vec<crate::rule::LintWarning>,
    mut suppressed: Option<&mut Vec<crate::rule::SuppressedWarning>>,
) -> Vec<crate::rule::LintWarning> {
    let inline_config = lint_ctx.inline_config();
    let mut kept = Vec::with_capacity(rule_warnings.len());

    for mut warning in rule_warnings {
        if lint_ctx
            .line_info(warning.line)
            .is_some_and(|info| info.in_kramdown_extension_block)
        {
            continue;
        }

        // Use the warning's rule_name if available, otherwise use the rule's name
        let rule_name_to_check = warning.rule_name.as_deref().unwrap_or(rule_name);

        // Extract the base rule name for sub-rules like "MD029-style" -> "MD029"
        let base_rule_name = if let Some(dash_pos) = rule_name_to_check.find('-') {
            &rule_name_to_check[..dash_pos]
        } else {
            rule_name_to_check
        };

        // Check if the rule is disabled at any line in the warning's range.
        // Multi-line warnings (e.g., reflow) report on the first line,
        // but inline disable comments may appear later in the range.
        // Guard: if end_line < line (e.g., end_line=0), fall back to
        // checking only the warning's line to match original behavior.
        let end = if warning.end_line >= warning.line {
            warning.end_line
        } else {
            warning.line
        };
        let disabled_at = (warning.line..=end).find_map(|line| {
            inline_config
                .disabling_layer(base_rule_name, line)
                .map(|layer| (line, layer))
        });
        if let Some((line, layer)) = disabled_at {
            if let Some(record) = suppressed.as_deref_mut() {
                record.push(crate::rule::SuppressedWarning {
                    rule_name: base_rule_name.to_string(),
                    line,
                    layer,
                });
            }
            continue;
        }

        // Apply severity override from config if present
        if let Some(cfg) = config
            && let Some(override_severity) = cfg.get_rule_severity(rule_name_to_check)
        {
            warning.severity = override_severity;
        }

        kept.push(warning);
    }

    kept
}

/// Lint a file and contribute to workspace index for cross-file analysis
///
/// This variant performs linting and optionally populates a `FileIndex` with data
/// needed for cross-file validation. The FileIndex is populated during linting,
/// avoiding duplicate parsing.
///
/// Returns: (warnings, FileIndex) - the FileIndex contains headings/links for cross-file rules
#[cfg_attr(test, allow(unused_variables))]
#[allow(clippy::needless_pass_by_value)] // Public compatibility: callers already pass an owned path.
pub fn lint_and_index(
    content: &str,
    rules: &[Box<dyn Rule>],
    verbose: bool,
    flavor: crate::config::MarkdownFlavor,
    source_file: Option<std::path::PathBuf>,
    config: Option<&crate::config::Config>,
) -> (LintResult, crate::workspace_index::FileIndex) {
    lint_and_index_with_paths(
        content,
        rules,
        verbose,
        flavor,
        DocumentPaths::same(source_file.as_deref()),
        config,
    )
}

/// The two path roles involved in document processing.
#[derive(Debug, Clone, Copy, Default)]
pub struct DocumentPaths<'a> {
    /// Logical path used for per-file configuration matching.
    pub config_path: Option<&'a std::path::Path>,
    /// Native path exposed to filesystem-aware rules.
    pub source_file: Option<&'a std::path::Path>,
    /// Run-scoped virtual paths visible to filesystem-aware link rules.
    pub link_target_policy: Option<&'a crate::lint_context::LinkTargetPolicy>,
}

impl<'a> DocumentPaths<'a> {
    /// Use one native path for both roles.
    pub fn same(path: Option<&'a std::path::Path>) -> Self {
        Self {
            config_path: path,
            source_file: path,
            link_target_policy: None,
        }
    }
}

/// Lint a document while keeping configuration matching separate from filesystem context.
///
/// `paths.config_path` selects per-file ignores and other path-scoped configuration.
/// `paths.source_file` is exposed to rules that need a real filesystem location. Native
/// adapters normally pass the same path for both; virtual adapters can supply only
/// `config_path` without accidentally enabling filesystem-dependent rule behavior.
#[cfg_attr(test, allow(unused_variables))]
pub fn lint_and_index_with_paths(
    content: &str,
    rules: &[Box<dyn Rule>],
    verbose: bool,
    flavor: crate::config::MarkdownFlavor,
    paths: DocumentPaths<'_>,
    config: Option<&crate::config::Config>,
) -> (LintResult, crate::workspace_index::FileIndex) {
    let mut warnings = Vec::new();
    // Compute content hash for change detection
    let content_hash = compute_content_hash(content);
    let mut file_index = crate::workspace_index::FileIndex::with_hash(content_hash);

    let conflict = config.map_or_else(
        || {
            crate::merge_conflict::detect_for_rules(
                content,
                rules,
                &crate::config::Config::default(),
                paths.config_path,
            )
        },
        |config| crate::merge_conflict::detect_for_rules(content, rules, config, paths.config_path),
    );
    if let Some(conflict) = conflict {
        return (Ok(vec![conflict]), file_index);
    }

    // Early return for empty content
    if content.is_empty() {
        return (Ok(warnings), file_index);
    }

    // The rules `per-file-ignores` takes away for this file. It decides what this
    // file REPORTS, and nothing else: the index contribution at the end of this
    // function deliberately keeps running every cross-file rule, because a file's
    // headings and links belong to the workspace rather than to its own report.
    // Dropping a rule from the index instead would break the links pointing HERE,
    // in files that never named it.
    let ignored_for_file = match (config, paths.config_path) {
        (Some(cfg), Some(path)) => cfg.get_ignored_rules_for_file(path),
        _ => std::collections::HashSet::new(),
    };

    // Parse LintContext once (includes inline config parsing)
    let lint_ctx = time_function!(
        "lint: parse lint context",
        crate::lint_context::LintContext::new(content, flavor, paths.source_file.map(std::path::Path::to_path_buf))
    );
    let lint_ctx = match paths.link_target_policy {
        Some(policy) => lint_ctx.with_link_target_policy(policy.clone()),
        None => lint_ctx,
    };
    let inline_config = lint_ctx.inline_config();

    // Export inline config data to FileIndex for cross-file rule filtering
    let (file_disabled, persistent_transitions, line_disabled) = inline_config.export_for_file_index();
    file_index.file_disabled_rules = file_disabled;
    file_index.persistent_transitions = persistent_transitions;
    file_index.line_disabled_rules = line_disabled;

    // Analyze content characteristics for rule filtering
    let characteristics = time_function!(
        "lint: analyze content characteristics",
        ContentCharacteristics::analyze(content)
    );

    // Filter rules based on per-file-ignores and content characteristics
    let applicable_rules: Vec<_> = rules
        .iter()
        .filter(|rule| !ignored_for_file.contains(rule.name()))
        .filter(|rule| !(rule.skippable_by_category() && characteristics.should_skip_rule(rule.as_ref())))
        .collect();

    // Calculate skipped rules count before consuming applicable_rules
    #[cfg(not(test))]
    let total_rules = rules.len();
    #[cfg(not(test))]
    let applicable_count = applicable_rules.len();

    #[cfg(not(target_arch = "wasm32"))]
    let profile_rules = std::env::var("RUMDL_PROFILE_RULES").is_ok();

    // Automatic inline config support: merge inline overrides into config once,
    // then recreate only the affected rules. Works for ALL rules without per-rule changes.
    let inline_overrides = inline_config.get_all_rule_configs();
    let merged_config = if !inline_overrides.is_empty() {
        config.map(|c| c.merge_with_inline_config(inline_config))
    } else {
        None
    };
    let effective_config = merged_config.as_ref().or(config);

    // Cache recreated rules for rules with inline overrides
    let mut recreated_rules: std::collections::HashMap<String, Box<dyn crate::rule::Rule>> =
        std::collections::HashMap::new();

    // Pre-create rules that have inline config overrides
    if let Some(cfg) = effective_config {
        for rule_name in inline_overrides.keys() {
            if let Some(recreated) = crate::rules::create_rule_by_name(rule_name, cfg) {
                recreated_rules.insert(rule_name.clone(), recreated);
            }
        }
    }

    // A rule reporting on the run's inline disable comments needs to know what they
    // removed, which costs a record per suppressed warning, so it is only kept when
    // such a rule is going to read it.
    let suppression_observers: Vec<_> = applicable_rules
        .iter()
        .filter(|rule| rule.observes_suppressions() && !rule.should_skip(&lint_ctx))
        .collect();
    let mut suppressed = Vec::new();

    {
        let _timer = profiling::ScopedTimer::new("lint: run single-file rules");
        for rule in &applicable_rules {
            #[cfg(not(target_arch = "wasm32"))]
            let rule_start = Instant::now();

            // Skip rules that indicate they should be skipped (opt-in rules, content-based skipping)
            if rule.should_skip(&lint_ctx) {
                continue;
            }

            // Use recreated rule if inline config overrides exist for this rule
            let effective_rule: &dyn crate::rule::Rule = recreated_rules
                .get(rule.name())
                .map_or(rule.as_ref(), std::convert::AsRef::as_ref);

            // Run single-file check with the effective rule (possibly with inline config applied)
            let result = effective_rule.check(&lint_ctx);

            match result {
                Ok(rule_warnings) => {
                    let record = if suppression_observers.is_empty() {
                        None
                    } else {
                        Some(&mut suppressed)
                    };
                    let filtered_warnings =
                        retain_reportable_warnings(&lint_ctx, config, rule.name(), rule_warnings, record);
                    warnings.extend(filtered_warnings);
                }
                Err(e) => {
                    log::error!("Error checking rule {}: {}", rule.name(), e);
                    return (Err(e), file_index);
                }
            }

            #[cfg(not(target_arch = "wasm32"))]
            {
                let rule_duration = rule_start.elapsed();
                if profile_rules {
                    eprintln!("[RULE] {:6} {:?}", rule.name(), rule_duration);
                }

                #[cfg(not(test))]
                if verbose && rule_duration.as_millis() > 500 {
                    log::debug!("Rule {} took {:?}", rule.name(), rule_duration);
                }
            }
        }
    }

    // Report on the inline disable comments, now that every single-file rule has run
    // and the suppressions are complete.
    if !suppression_observers.is_empty() {
        let _timer = profiling::ScopedTimer::new("lint: run suppression rules");

        // A workspace-scope rule has its warnings filtered after this point, and for a
        // single-file run not at all, so its findings never reach the report and
        // nothing can be concluded about a comment naming it. A rule this file
        // ignores does not report either, for the same reason.
        let report = crate::rule::SuppressionReport {
            suppressed,
            judged_rules: rules
                .iter()
                .filter(|rule| rule.cross_file_scope() != crate::rule::CrossFileScope::Workspace)
                .filter(|rule| !ignored_for_file.contains(rule.name()))
                .map(|rule| rule.name().to_string())
                .collect(),
        };

        for rule in &suppression_observers {
            match rule.check_suppressions(&lint_ctx, &report) {
                Ok(rule_warnings) => {
                    let filtered_warnings =
                        retain_reportable_warnings(&lint_ctx, config, rule.name(), rule_warnings, None);
                    warnings.extend(filtered_warnings);
                }
                Err(e) => {
                    log::error!("Error checking rule {}: {}", rule.name(), e);
                    return (Err(e), file_index);
                }
            }
        }
    }

    // Contribute to index for cross-file rules (done after all rules checked)
    // NOTE: We iterate over ALL rules (not just applicable_rules) because cross-file
    // rules need to extract data from every file in the workspace, regardless of whether
    // that file has content that would trigger the rule, and regardless of what this
    // file's own configuration reports. For example, MD051 needs to index headings from
    // files that have no links (like target.md) so that links FROM other files TO those
    // headings can be validated - including from a file that ignores MD051 itself.
    time_section!("lint: contribute cross-file data", {
        for rule in rules {
            if rule.cross_file_scope() == crate::rule::CrossFileScope::Workspace {
                rule.contribute_to_index(&lint_ctx, &mut file_index);
            }
        }
    });

    #[cfg(not(test))]
    if verbose {
        let skipped_rules = total_rules - applicable_count;
        if skipped_rules > 0 {
            log::debug!("Skipped {skipped_rules} of {total_rules} rules based on content analysis");
        }
    }

    conform_fix_line_endings(content, &mut warnings);

    (Ok(warnings), file_index)
}

/// Run cross-file checks for rules that need workspace-wide validation
///
/// This should be called after all files have been linted and the WorkspaceIndex
/// has been built from the accumulated FileIndex data.
///
/// Note: This takes the FileIndex instead of content to avoid re-parsing each file.
/// The FileIndex was already populated during contribute_to_index in the linting phase.
///
/// Rules can use workspace_index methods for cross-file validation:
/// - `get_file(path)` - to look up headings in target files (for MD051)
///
/// Returns additional warnings from cross-file validation.
pub fn run_cross_file_checks(
    file_path: &std::path::Path,
    file_index: &crate::workspace_index::FileIndex,
    rules: &[Box<dyn Rule>],
    workspace_index: &crate::workspace_index::WorkspaceIndex,
    config: Option<&crate::config::Config>,
) -> LintResult {
    use crate::rule::CrossFileScope;

    let mut warnings = Vec::new();

    // Honor `per-file-ignores` for cross-file rules. Cross-file warnings are
    // attributed to `file_path` (the file holding the link), so a rule ignored
    // for that file must not emit them. This applies on every path; single-file
    // rule filtering does not cover cross-file checks because they run over the
    // config group's full rule set, and cross-file rules share link data.
    let ignored_rules_for_file = config.map(|cfg| cfg.get_ignored_rules_for_file(file_path));

    // Only check rules that need cross-file analysis
    for rule in rules {
        if rule.cross_file_scope() != CrossFileScope::Workspace {
            continue;
        }

        if ignored_rules_for_file
            .as_ref()
            .is_some_and(|ignored| ignored.contains(rule.name()))
        {
            continue;
        }

        match time_function!(
            "workspace: cross-file rule check",
            rule.cross_file_check(file_path, file_index, workspace_index)
        ) {
            Ok(rule_warnings) => {
                // Filter cross-file warnings based on inline config stored in file_index
                let filtered: Vec<_> = rule_warnings
                    .into_iter()
                    .filter(|w| !file_index.is_rule_disabled_at_line(rule.name(), w.line))
                    .map(|mut warning| {
                        // Apply severity override from config if present
                        if let Some(cfg) = config
                            && let Some(override_severity) = cfg.get_rule_severity(rule.name())
                        {
                            warning.severity = override_severity;
                        }
                        warning
                    })
                    .collect();
                warnings.extend(filtered);
            }
            Err(e) => {
                log::error!("Error in cross-file check for rule {}: {}", rule.name(), e);
                return Err(e);
            }
        }
    }

    Ok(warnings)
}

/// Get the profiling report
pub fn get_profiling_report() -> String {
    profiling::get_report()
}

/// Reset the profiling data
pub fn reset_profiling() {
    profiling::reset()
}

/// Get regex cache statistics for performance monitoring
pub fn get_regex_cache_stats() -> std::collections::HashMap<String, u64> {
    crate::utils::regex_cache::get_cache_stats()
}

#[cfg(test)]
mod tests {
    use super::*;
    use crate::rule::Rule;
    use crate::rules::{MD001HeadingIncrement, MD009TrailingSpaces};

    #[test]
    fn test_content_characteristics_analyze() {
        // Test empty content
        let chars = ContentCharacteristics::analyze("");
        assert!(!chars.has_headings);
        assert!(!chars.has_lists);
        assert!(!chars.has_links);
        assert!(!chars.has_code);
        assert!(!chars.has_emphasis);
        assert!(!chars.has_html);
        assert!(!chars.has_tables);
        assert!(!chars.has_blockquotes);
        assert!(!chars.has_images);

        // Test content with headings
        let chars = ContentCharacteristics::analyze("# Heading");
        assert!(chars.has_headings);

        // Test setext headings
        let chars = ContentCharacteristics::analyze("Heading\n=======");
        assert!(chars.has_headings);

        // Blockquoted ATX headings emit fragment anchors, so Heading-category
        // rules (MD051/MD080) must run for blockquote-only documents.
        let chars = ContentCharacteristics::analyze("> ## Alpha\n>\n> ## Alpha");
        assert!(chars.has_headings, "blockquoted ATX heading must set has_headings");
        let chars = ContentCharacteristics::analyze(">> # Nested");
        assert!(
            chars.has_headings,
            "nested-blockquote ATX heading must set has_headings"
        );
        // A tab after the blockquote marker is also a valid heading
        // (`parse_blockquote_prefix` accepts it).
        let chars = ContentCharacteristics::analyze(">\t## Tabbed");
        assert!(
            chars.has_headings,
            "tab-separated blockquote ATX heading must set has_headings"
        );

        // Test lists
        let chars = ContentCharacteristics::analyze("* Item\n- Item 2\n+ Item 3");
        assert!(chars.has_lists);

        // Test ordered lists
        let chars = ContentCharacteristics::analyze("1. First\n2. Second");
        assert!(chars.has_lists);

        // Test links
        let chars = ContentCharacteristics::analyze("[link](url)");
        assert!(chars.has_links);

        // Test URLs
        let chars = ContentCharacteristics::analyze("Visit https://example.com");
        assert!(chars.has_links);

        // Test images
        let chars = ContentCharacteristics::analyze("![alt text](image.png)");
        assert!(chars.has_images);

        // Test code
        let chars = ContentCharacteristics::analyze("`inline code`");
        assert!(chars.has_code);

        let chars = ContentCharacteristics::analyze("~~~\ncode block\n~~~");
        assert!(chars.has_code);

        // Test indented code blocks (4 spaces)
        let chars = ContentCharacteristics::analyze("Text\n\n    indented code\n\nMore text");
        assert!(chars.has_code);

        // Test tab-indented code blocks
        let chars = ContentCharacteristics::analyze("Text\n\n\ttab indented code\n\nMore text");
        assert!(chars.has_code);

        // Test mixed whitespace indented code (2 spaces + tab = 4 columns)
        let chars = ContentCharacteristics::analyze("Text\n\n  \tmixed indent code\n\nMore text");
        assert!(chars.has_code);

        // Test 1 space + tab (also 4 columns due to tab expansion)
        let chars = ContentCharacteristics::analyze("Text\n\n \ttab after space\n\nMore text");
        assert!(chars.has_code);

        // Test emphasis
        let chars = ContentCharacteristics::analyze("*emphasis* and _more_");
        assert!(chars.has_emphasis);

        // Test HTML
        let chars = ContentCharacteristics::analyze("<div>HTML content</div>");
        assert!(chars.has_html);

        // Test tables
        let chars = ContentCharacteristics::analyze("| Header | Header |\n|--------|--------|");
        assert!(chars.has_tables);

        // Test blockquotes
        let chars = ContentCharacteristics::analyze("> Quote");
        assert!(chars.has_blockquotes);

        // Test mixed content
        let content = "# Heading\n* List item\n[link](url)\n`code`\n*emphasis*\n<p>html</p>\n| table |\n> quote\n![image](img.png)";
        let chars = ContentCharacteristics::analyze(content);
        assert!(chars.has_headings);
        assert!(chars.has_lists);
        assert!(chars.has_links);
        assert!(chars.has_code);
        assert!(chars.has_emphasis);
        assert!(chars.has_html);
        assert!(chars.has_tables);
        assert!(chars.has_blockquotes);
        assert!(chars.has_images);
    }

    #[test]
    fn test_content_characteristics_parenthesized_ordered_list() {
        assert!(ContentCharacteristics::analyze("1) first\n2) second").has_lists);
        assert!(ContentCharacteristics::analyze("  1) indented first\n  2) second").has_lists);
        assert!(ContentCharacteristics::analyze("> 1) quoted item").has_lists);
    }

    #[test]
    fn test_content_characteristics_should_skip_rule() {
        let chars = ContentCharacteristics {
            has_headings: true,
            has_lists: false,
            has_links: true,
            has_code: false,
            has_emphasis: true,
            has_html: false,
            has_tables: true,
            has_blockquotes: false,
            has_images: false,
        };

        // Create test rules for different categories
        let heading_rule = MD001HeadingIncrement::default();
        assert!(!chars.should_skip_rule(&heading_rule));

        let trailing_spaces_rule = MD009TrailingSpaces::new(2, false);
        assert!(!chars.should_skip_rule(&trailing_spaces_rule)); // Whitespace rules always run

        // Test skipping based on content
        let chars_no_headings = ContentCharacteristics {
            has_headings: false,
            ..Default::default()
        };
        assert!(chars_no_headings.should_skip_rule(&heading_rule));
    }

    #[test]
    fn test_lint_empty_content() {
        let rules: Vec<Box<dyn Rule>> = vec![Box::new(MD001HeadingIncrement::default())];

        let result = lint("", &rules, false, crate::config::MarkdownFlavor::Standard, None, None);
        assert!(result.is_ok());
        assert!(result.unwrap().is_empty());
    }

    #[test]
    fn test_lint_with_violations() {
        let content = "## Level 2\n#### Level 4"; // Skips level 3
        let rules: Vec<Box<dyn Rule>> = vec![Box::new(MD001HeadingIncrement::default())];

        let result = lint(
            content,
            &rules,
            false,
            crate::config::MarkdownFlavor::Standard,
            None,
            None,
        );
        assert!(result.is_ok());
        let warnings = result.unwrap();
        assert!(!warnings.is_empty());
        // Check the rule field of LintWarning struct
        assert_eq!(warnings[0].rule_name.as_deref(), Some("MD001"));
    }

    #[test]
    fn test_lint_with_inline_disable() {
        let content = "<!-- rumdl-disable MD001 -->\n## Level 2\n#### Level 4";
        let rules: Vec<Box<dyn Rule>> = vec![Box::new(MD001HeadingIncrement::default())];

        let result = lint(
            content,
            &rules,
            false,
            crate::config::MarkdownFlavor::Standard,
            None,
            None,
        );
        assert!(result.is_ok());
        let warnings = result.unwrap();
        assert!(warnings.is_empty()); // Should be disabled by inline comment
    }

    #[test]
    fn test_lint_checks_setext_headings_the_content_prefilter_must_keep() {
        // Each document holds two headings with the same anchor and nothing else
        // that looks like a heading, so the heading rules run only if the
        // prefilter recognizes the underline.
        let rules: Vec<Box<dyn Rule>> = vec![Box::new(crate::rules::MD080HeadingAnchorCollision::new())];
        for content in [
            "Title\n-\n\ntitle\n-\n",
            "Title\n=\n\ntitle\n=\n",
            "> Title\n> ===\n\n> title\n> ===\n",
            "> Title\n> -\n\n> title\n> -\n",
        ] {
            let warnings = lint(
                content,
                &rules,
                false,
                crate::config::MarkdownFlavor::Standard,
                None,
                None,
            )
            .unwrap();
            let lines: Vec<_> = warnings.iter().map(|warning| warning.line).collect();
            assert_eq!(lines, [4], "{content:?}");
        }
    }

    #[test]
    fn test_lint_rule_filtering() {
        // Content with no lists
        let content = "# Heading\nJust text";
        let rules: Vec<Box<dyn Rule>> = vec![
            Box::new(MD001HeadingIncrement::default()),
            // A list-related rule would be skipped
        ];

        let result = lint(
            content,
            &rules,
            false,
            crate::config::MarkdownFlavor::Standard,
            None,
            None,
        );
        assert!(result.is_ok());
    }

    #[test]
    fn test_get_profiling_report() {
        // Just test that it returns a string without panicking
        let report = get_profiling_report();
        assert!(!report.is_empty());
        assert!(report.contains("Profiling"));
    }

    #[test]
    fn test_reset_profiling() {
        // Test that reset_profiling doesn't panic
        reset_profiling();

        // After reset, report should indicate no measurements or profiling disabled
        let report = get_profiling_report();
        assert!(report.contains("disabled") || report.contains("no measurements"));
    }

    #[test]
    fn test_get_regex_cache_stats() {
        let stats = get_regex_cache_stats();
        // Stats should be a valid HashMap (might be empty)
        assert!(stats.is_empty() || !stats.is_empty());

        // If not empty, all values should be positive
        for count in stats.values() {
            assert!(*count > 0);
        }
    }

    #[test]
    fn test_content_characteristics_edge_cases() {
        // A setext underline is any run of `=` or `-`, a single character
        // included, and one in a blockquote follows the quote's markers.
        for content in [
            "Title\n-",
            "Title\n=",
            "Title\n--",
            "> Title\n> ===",
            ">\tTitle\n>\t-",
            ">> Title\n>>-",
        ] {
            assert!(ContentCharacteristics::analyze(content).has_headings, "{content:?}");
        }
        for content in ["> Prose\n>", "Prose\n> text", "Prose\n"] {
            assert!(!ContentCharacteristics::analyze(content).has_headings, "{content:?}");
        }

        // Test list detection - we now include potential list patterns (with or without space)
        // to support user-intention detection in MD030
        let chars = ContentCharacteristics::analyze("*emphasis*"); // Could be list or emphasis
        assert!(chars.has_lists); // Run list rules to be safe

        let chars = ContentCharacteristics::analyze("1.Item"); // Could be list without space
        assert!(chars.has_lists); // Run list rules for user-intention detection

        // Test blockquote must be at start of line
        let chars = ContentCharacteristics::analyze("text > not a quote");
        assert!(!chars.has_blockquotes);
    }

    /// One document that draws a line-inserting fix from every rule known to
    /// write a bare `\n` into its replacement: MD071 (blank line after front
    /// matter), MD022 (blank lines around headings), MD032 (around lists),
    /// MD031 (around fences), MD014 (dollar prompts), MD058 (around tables) and
    /// MD047 (final newline).
    const LINE_INSERTING_FIXES: &str = "---\ntitle: x\n---\n# Heading\ntext\n## Sub\n- item\ntext\n```sh\n$ ls\n```\ntext\n| a | b |\n|---|---|\n| 1 | 2 |\ntext";

    /// Every fix replacement (and additional edit) of every warning, keyed by rule.
    fn fix_replacements(content: &str) -> Vec<(String, String)> {
        let config = crate::config::Config::default();
        let rules = crate::rules::all_rules(&config);
        let warnings = lint(
            content,
            &rules,
            false,
            crate::config::MarkdownFlavor::Standard,
            None,
            Some(&config),
        )
        .unwrap();
        let mut out = Vec::new();
        for warning in warnings {
            let Some(fix) = warning.fix else { continue };
            let rule = warning.rule_name.clone().unwrap_or_default();
            let mut stack = vec![fix];
            while let Some(fix) = stack.pop() {
                out.push((rule.clone(), fix.replacement.clone()));
                stack.extend(fix.additional_edits);
            }
        }
        out
    }

    fn has_bare_lf(text: &str) -> bool {
        let bytes = text.as_bytes();
        bytes
            .iter()
            .enumerate()
            .any(|(i, b)| *b == b'\n' && (i == 0 || bytes[i - 1] != b'\r'))
    }

    #[test]
    fn fix_replacements_use_the_documents_crlf_line_ending() {
        let crlf = LINE_INSERTING_FIXES.replace('\n', "\r\n");
        let replacements = fix_replacements(&crlf);

        let bare: Vec<_> = replacements.iter().filter(|(_, r)| has_bare_lf(r)).collect();
        assert!(bare.is_empty(), "bare LF in a fix for a CRLF document: {bare:?}");

        // Positive control: the rules this document was written for did fire and
        // did insert a line ending, so the assertion above examined real fixes.
        let mut crlf_rules: Vec<_> = replacements
            .iter()
            .filter(|(_, r)| r.contains("\r\n"))
            .map(|(rule, _)| rule.as_str())
            .collect();
        crlf_rules.sort_unstable();
        crlf_rules.dedup();
        for rule in ["MD014", "MD022", "MD031", "MD032", "MD047", "MD058", "MD071"] {
            assert!(
                crlf_rules.contains(&rule),
                "{rule} inserted no CRLF line ending; got {crlf_rules:?}"
            );
        }
    }

    #[test]
    fn fix_replacements_stay_lf_for_lf_and_mixed_documents() {
        // The same rules on the LF document write `\n`, untouched.
        let lf = fix_replacements(LINE_INSERTING_FIXES);
        assert!(lf.iter().any(|(_, r)| has_bare_lf(r)));
        assert!(!lf.iter().any(|(_, r)| r.contains('\r')));

        // A document with mixed endings has no convention to conform to, so
        // its fixes are left exactly as the rules wrote them.
        let mixed = LINE_INSERTING_FIXES.replacen('\n', "\r\n", 1);
        assert_eq!(
            crate::utils::detect_line_ending_enum(&mixed),
            crate::utils::LineEnding::Mixed
        );
        let mixed = fix_replacements(&mixed);
        assert!(mixed.iter().any(|(_, r)| has_bare_lf(r)));
    }
}