List of all items
Structs
Functions
- api::align_global_gap
- api::align_global_no_gap
- api::align_local_gap
- api::align_local_no_gap
- api::create_score_matrix_f32
- api::create_score_matrix_i32
- args_parser::get_align_mode
- args_parser::get_amb_strand_mode
- args_parser::get_b_f
- args_parser::get_gap_open_gap_ext
- args_parser::get_graph_path
- args_parser::get_match_mismatch
- args_parser::get_matrix_type
- args_parser::get_out_file
- args_parser::get_sequence_path
- bitfield_path::dir_from_bitvec
- bitfield_path::pred_from_bitvec
- bitfield_path::set_path_cell
- gaf_output::gaf_of_gap_abpoa
- gaf_output::gaf_of_gap_local_poa
- gaf_output::gaf_of_global_abpoa
- gaf_output::gaf_of_global_abpoa_simd
- gaf_output::gaf_of_local_poa
- gaf_output::gaf_of_local_poa_simd
- gap_global_abpoa::exec
- gap_local_poa::exec
- global_abpoa::exec
- global_abpoa::exec_simd
- graph::create_graph_struct
- graph::create_nodes_paths
- graph::get_sorted_handles
- graph::read_graph
- local_poa::exec
- local_poa::exec_simd
- pathwise_alignment::exec
- score_matrix::create_f32_scores_matrix
- score_matrix::create_score_matrix
- score_matrix::create_score_matrix_from_matrix_file
- score_matrix::create_score_matrix_match_mis
- score_matrix::create_score_matrix_match_mis_f32
- sequences::build_align_string
- sequences::get_sequences
- sequences::rev_and_compl
- utils::create_handle_pos_in_lnz
- utils::get_max_d_u_l
- utils::handle_pos_in_lnz_from_hashgraph
- utils::set_ampl_for_row
- utils::set_r_values