Crate rsomics_vcf_popgen 

Population-genetics statistics from VCF.

Each subcommand shares a single-pass VCF parser; output matches vcftools column layout for drop-in compatibility.

Re-exports

pub use freq::FreqRecord;

pub use freq::freq;

pub use hardy::HardyRecord;

pub use hardy::hardy;

pub use het::HetRecord;

pub use het::het;

pub use missing::MissingIndv;

pub use missing::MissingSite;

pub use missing::missing_indv;

pub use missing::missing_site;

pub use pi::PiWindow;

pub use pi::pi_windows;

pub use singleton::SingletonRecord;

pub use singleton::singletons;

Modules

freq

Allele frequency per site — equivalent to vcftools --freq.

hardy

Hardy-Weinberg equilibrium test per site — equivalent to vcftools --hardy.

het

Per-individual heterozygosity — equivalent to vcftools --het.

missing

Missingness statistics — equivalent to vcftools --missing-site and --missing-indv.

pi

Nucleotide diversity (π) in sliding windows — equivalent to vcftools --window-pi.

singleton

Singleton sites — equivalent to vcftools --singletons.

vcf

Shared VCF record parser used by every subcommand.