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rsomics-ilr-0.1.0
rsomics-ilr 0.1.0
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crates.io
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Bengerthelorf
Dependencies
clap ^4
normal
rayon ^1
normal
rsomics-common ^0.6
normal
rsomics-help ^0.3
normal
criterion ^0.7
dev
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33.33%
of the crate is documented
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x86_64-unknown-linux-gnu
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Crate rsomics_ilr
rsomics_
ilr
0.1.0
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rsomics_
ilr
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Structs
§
IlrMatrix
Table
A samples × features composition matrix with row (sample) and column (feature) IDs, stored row-major. Mirrors what skbio ingests from a DataFrame.
Functions
§
ilr
Isometric log-ratio transform (Egozcue et al. 2003), matching
skbio.stats.composition.ilr
with its default basis:
ilr(x) = clr(x) · Vᵀ
where
V
is the (D-1)×D Gram-Schmidt orthonormal basis.
run
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