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rsomics-bioenv-0.1.0
rsomics-bioenv 0.1.0
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MIT
OR
Apache-2.0
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crates.io
Source
Owners
Bengerthelorf
Dependencies
clap ^4
normal
rayon ^1
normal
rsomics-common ^0.6
normal
rsomics-help ^0.3
normal
criterion ^0.7
dev
Versions
27.27%
of the crate is documented
Platform
x86_64-unknown-linux-gnu
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Crate rsomics_bioenv
rsomics_
bioenv
0.1.0
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Crate Items
Structs
Functions
Crate
rsomics_
bioenv
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Source
Structs
§
Distance
Matrix
A square, symmetric distance matrix with sample ids, in row-major order.
EnvTable
Environmental variables table: samples (rows) × numeric variables (columns).
Size
Best
Standardized
Standardized env variables stored column-major (
vars.len()
columns of
n
).
Functions
§
bioenv
BIO-ENV: for each subset size 1..=p, the variable subset whose standardized Euclidean distances are maximally Spearman-correlated with the community distances.
dm_flat
is the community matrix’s condensed upper triangle.
read_
env
read_
matrix
run_
bioenv
Select
columns
(or all), standardize onto the matrix ids, and run BIO-ENV.
write_
result