Crate rosalind [−] [src]
The rosalind
crate provides fuctions to solve probles from Rosalind site.
Counting DNA Nucleotides
Examples
use rosalind::RosalindError::UnknownNucleotide; use rosalind::dna::*; let dna = "AGCTTTTCATTCTGACTGCAACGGGCAATATGTCTCTGTGTGGATTAAAAAAAGAGTGTCTGATAGCAGC"; let dna_nucleotides = DNANucleotides {A: 20, C: 12, G: 17, T: 21}; assert_eq!(count_dna_nucleotides(dna).unwrap(), dna_nucleotides); assert_eq!(dna_nucleotides.to_string(), "20 12 17 21"); assert_eq!(count_dna_nucleotides("\n").unwrap(), DNANucleotides {A: 0, C: 0, G: 0, T: 0}); assert_eq!(count_dna_nucleotides("Z").unwrap_err(), UnknownNucleotide('Z'));
Transcribing DNA into RNA
Examples
use rosalind::RosalindError::UnknownNucleotide; use rosalind::rna::*; let dna = "GATGGAACTTGACTACGTAAATT"; assert_eq!(transcribe_dna_into_rna(dna).unwrap(), "GAUGGAACUUGACUACGUAAAUU"); assert_eq!(transcribe_dna_into_rna("\n").unwrap(), ""); assert_eq!(transcribe_dna_into_rna("Z").unwrap_err(), UnknownNucleotide('Z'));
Complementing a Strand of DNA
Examples
use rosalind::RosalindError::UnknownNucleotide; use rosalind::revc::*; let dna = "AAAACCCGGT"; assert_eq!(reverse_complement_dna(dna).unwrap(), "ACCGGGTTTT"); assert_eq!(reverse_complement_dna("\n").unwrap(), ""); assert_eq!(reverse_complement_dna("Z").unwrap_err(), UnknownNucleotide('Z'));
Rabbits and Recurrence Relations
Examples
use rosalind::fib::*; assert_eq!(recurrence_relation(5, 3), 19);
Modules
dna |
Module for |
fib |
Module for |
revc |
Module for |
rna |
Module for |
Enums
RosalindError |