List of all items
Structs
- shared::alignment::DAlignment
- shared::alignment::ErrorAlignment
- shared::alignment::ErrorDAlignment
- shared::alignment::ErrorJAlignment
- shared::alignment::ErrorVAlignment
- shared::alignment::VJAlignment
- shared::amino_acids::DegenerateCodon
- shared::amino_acids::DegenerateCodonSequence
- shared::data_structures::RangeArray1
- shared::data_structures::RangeArray2
- shared::data_structures::RangeArray3
- shared::distributions::DiscreteDistribution
- shared::distributions::ErrorDistribution
- shared::distributions::HistogramDistribution
- shared::distributions::MarkovDNA
- shared::distributions::UniformError
- shared::errors::ErrorConstantRate
- shared::errors::ErrorUniformRate
- shared::errors::FeatureErrorConstant
- shared::errors::FeatureErrorUniform
- shared::feature::CategoricalFeature1
- shared::feature::CategoricalFeature1g1
- shared::feature::CategoricalFeature1g2
- shared::feature::CategoricalFeature2
- shared::feature::CategoricalFeature2g1
- shared::feature::CategoricalFeature3
- shared::feature::InfEvent
- shared::feature::InsertionFeature
- shared::feature::ResultHuman
- shared::feature::ResultInference
- shared::gene::Gene
- shared::likelihood::LikelihoodInsContainer
- shared::markov_chain::DNAMarkovChain
- shared::model::GenerationResult
- shared::model::Generator
- shared::parameters::AlignmentParameters
- shared::parameters::InferenceParameters
- shared::parser::Marginal
- shared::parser::ParserMarginals
- shared::parser::ParserParams
- shared::sequence::AminoAcid
- shared::sequence::Dna
- shared::sequence::DnaLike
- shared::utils::RecordModel
- v_dj::feature::AggregatedFeatureStartDAndJ
- v_dj::inference::Features
- vdj::event::Event
- vdj::event::StaticEvent
- vdj::feature::AggregatedFeatureEndV
- vdj::feature::AggregatedFeatureSpanD
- vdj::feature::AggregatedFeatureStartJ
- vdj::feature::FeatureDJ
- vdj::feature::FeatureVD
- vdj::inference::Features
- vdj::model::Generative
- vdj::model::Generator
- vdj::model::Model
- vdj::sequence::Sequence
- vj::event::StaticEvent
- vj::model::Generator
- vj::model::Model
Enums
- shared::errors::ErrorParameters
- shared::errors::FeatureError
- shared::event::StaticEvent
- shared::feature::Features
- shared::likelihood::Likelihood
- shared::likelihood::Likelihood1DContainer
- shared::likelihood::Likelihood2DContainer
- shared::likelihood::LikelihoodType
- shared::model::Model
- shared::model::ModelStructure
- shared::parser::EventType
- shared::sequence::DnaLikeEnum
- shared::sequence::SequenceType
- vdj::model::EntrySequence
Traits
- shared::feature::Feature
- shared::gene::ModelGen
- shared::model::Modelable
- shared::utils::Normalize
- shared::utils::Normalize2
- shared::utils::Normalize3
- shared::utils::NormalizeLast
- shared::utils::NormalizeLast2
Functions
- shared::distributions::calc_steady_state_dist
- shared::gene::genes_matching
- shared::model::sanitize_j
- shared::model::sanitize_v
- shared::parser::parse_file
- shared::parser::parse_str
- shared::sequence::codon_to_amino_acid
- shared::sequence::compatible_nucleotides
- shared::sequence::degenerate_dna_to_vec
- shared::sequence::degenerate_nucleotide
- shared::sequence::intersect_nucleotides
- shared::sequence::is_degenerate
- shared::sequence::nucleotides_inv
- shared::utils::count_differences
- shared::utils::difference_as_i64
- shared::utils::insert_in_order
- shared::utils::max_f64
- shared::utils::max_of_array
- shared::utils::mod_euclid
- shared::utils::normalize_transition_matrix
- shared::utils::send_warning
- shared::utils::sorted_and_complete
- shared::utils::sorted_and_complete_0start
- vdj::sequence::align_all_dgenes
- vdj::sequence::align_all_jgenes
- vdj::sequence::align_all_vgenes
- vdj::sequence::display_j_alignment
- vdj::sequence::display_v_alignment
Type Aliases
- shared::likelihood::Matrix16
- shared::likelihood::Matrix16x4
- shared::likelihood::Matrix4
- shared::likelihood::Matrix4x16
- shared::likelihood::Vector16
- shared::likelihood::Vector4