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Module fasta

refget_store

Module fasta 

Source
Expand description

FASTA-backed sequence store that loads sequences into memory.

Structs§

CachedDigest
A single sequence’s pre-computed digests.
DigestCache
Pre-computed digest cache for a FASTA file.
FastaSequenceStore
A sequence store that holds all sequences in memory, loaded from indexed FASTA files.
FastaSequenceSummary
Summary info for each sequence loaded from a FASTA file, useful for building SeqCol objects.
SeqColCache
Pre-computed SeqCol cache for a FASTA file.

Traits§

SidecarCache
Trait for FASTA sidecar cache files (e.g. .refget.json, .seqcol.json).