Module fasta 

FASTA-backed sequence store that loads sequences into memory.

Structs

CachedDigest

A single sequence’s pre-computed digests.

DigestCache

Pre-computed digest cache for a FASTA file.

FastaSequenceStore

A sequence store that holds all sequences in memory, loaded from indexed FASTA files.

FastaSequenceSummary

Summary info for each sequence loaded from a FASTA file, useful for building SeqCol objects.

SeqColCache

Pre-computed SeqCol cache for a FASTA file.

Traits

SidecarCache

Trait for FASTA sidecar cache files (e.g. .refget.json, .seqcol.json).