Module fasta 

Parser for FASTA files using noodles.

Extracts contig names and lengths from FASTA files. Supports both uncompressed and gzip/bgzip compressed files.

Supported extensions:

• .fa, .fasta, .fna (uncompressed)
• .fa.gz, .fasta.gz, .fna.gz (gzip compressed)
• .fa.bgz, .fasta.bgz, .fna.bgz (bgzip compressed)

Functions

is_fasta_file

Check if the path has a FASTA extension

parse_fasta_file

Parse a FASTA file and extract contig names and lengths.

parse_fasta_file_with_md5

Parse a FASTA file and compute MD5 checksums for each sequence.