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Module sam

Module sam 

Source

Enums§

ParseError

Functions§

normalize_sam_whitespace
Normalize SAM header lines that use spaces instead of tabs.
parse_bam_from_reader
Parse a BAM header from any reader (no file path required).
parse_cram_from_reader
Parse a CRAM header from any reader (no file path required).
parse_file
Parse a SAM/BAM/CRAM file and extract the header
parse_header_text
Parse header from raw text (stdin or pasted)