Module cluster 

Clustering module

License

This Source Code Form is subject to the terms of the Mozilla Public License, v. 2.0. If a copy of the MPL was not distributed with this file, You can obtain one at https://mozilla.org/MPL/2.0/.

Code examples both in the docstrings and rendered documentation are free to use.

Functions

cluster

Clustering a graph based on Markov steady-state flow calculations on its adjacency matrix.

clustering_cycle

Perform a Markov clustering cycle.

get_cluster_ids

Get a vector containing the cluster ID assignments (row indices of maximum values in each column).

get_cluster_map

Get a cluster mapping of cluster indices to original node indices.

get_tpm

get_tpm calculates the transfer probability matrix used in the Markov clustering algorithm.