List of all items
Structs
- _compressor_streaming_old::StreamingCompressor
- _compressor_streaming_old::StreamingCompressorConfig
- bloom_filter::BloomFilter
- compressor::Compressor
- compressor::CompressorConfig
- contig_compression::CompressionContext
- contig_compression::SegmentPart
- contig_iterator::BufferedPansnFileIterator
- contig_iterator::MultiFileIterator
- contig_iterator::PansnFileIterator
- decompressor::Decompressor
- decompressor::DecompressorConfig
- genome_io::GenomeIO
- genome_io::GenomeWriter
- kmer::Kmer
- lz_diff::LZDiff
- memory_bounded_queue::MemoryBoundedQueue
- priority_queue::BoundedPriorityQueue
- segment::Segment
- segment_buffer::BufferedSegments
- segment_buffer::SegmentPart
- streaming_compressor_queue::QueueStats
- streaming_compressor_queue::StreamingQueueCompressor
- streaming_compressor_queue::StreamingQueueConfig
- task::Task
- worker::SharedCompressorState
Enums
- kmer::KmerMode
- memory_bounded_queue::PushError
- memory_bounded_queue::TryPushError
- priority_queue::PopResult
- task::ContigProcessingStage
Traits
Functions
- contig_compression::compress_contig
- genome_io::parse_sample_from_header
- kmer::canonical_kmer
- kmer::decode_base
- kmer::encode_base
- kmer::extract_kmer
- kmer::reverse_complement
- kmer::reverse_complement_kmer
- kmer_extract::enumerate_kmers
- kmer_extract::find_candidate_kmers
- kmer_extract::remove_non_singletons
- lz_matcher::get_coding_cost_vector
- segment::split_at_splitters
- segment::split_at_splitters_with_size
- segment_compression::compress_reference_segment
- segment_compression::compress_segment
- segment_compression::compress_segment_configured
- segment_compression::compress_segment_plain
- segment_compression::decompress_segment
- segment_compression::decompress_segment_with_marker
- splitters::determine_splitters
- splitters::determine_splitters_streaming
- splitters::find_candidate_kmers_multi
- splitters::is_splitter
- tuple_packing::bytes_to_tuples
- tuple_packing::tuples_to_bytes
- worker::create_agc_archive
- worker::worker_thread
- zstd_pool::compress_segment_pooled
- zstd_pool::decompress_segment_pooled