Enums§
- Base
- Nucleotide encoding (A=0, C=1, G=2, T=3)
Constants§
- AGC_
FILE_ MAJOR - Archive file format version
- AGC_
FILE_ MINOR - AGC_
VER_ BUGFIX - AGC_
VER_ BUILD - AGC_
VER_ MAJOR - Version information
- AGC_
VER_ MINOR - CONTIG_
SEPARATOR - Contig separator byte in packed-contig mode (0xFF) C++ uses this to pack multiple contigs into a single compressed part
Functions§
- agc_
version - Full version string
Type Aliases§
- Contig
- A contig (genome sequence) represented as a vector of bytes Each byte typically represents a nucleotide base
- Packed
Block - A packed/compressed data block