1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
use crate::csv_core::parser::*;
use crate::csv_core::utils::*;
use crate::mmap::ReaderBytes;
use crate::ndjson_core::buffer::*;
use crate::prelude::*;
pub use arrow::{array::StructArray, io::ndjson};
use crate::mmap::MmapBytesReader;
use polars_core::{prelude::*, utils::accumulate_dataframes_vertical, POOL};
use rayon::prelude::*;
use serde_json::{Deserializer, Value};
use std::borrow::Cow;
use std::fs::File;
use std::io::Cursor;
use std::path::PathBuf;
const QUOTE_CHAR: u8 = "\"".as_bytes()[0];
const SEP: u8 = ",".as_bytes()[0];
#[must_use]
pub struct JsonLineReader<'a, R>
where
R: MmapBytesReader,
{
reader: R,
rechunk: bool,
n_rows: Option<usize>,
n_threads: Option<usize>,
infer_schema_len: Option<usize>,
chunk_size: usize,
schema: Option<&'a Schema>,
path: Option<PathBuf>,
low_memory: bool,
}
impl<'a, R> JsonLineReader<'a, R>
where
R: 'a + MmapBytesReader,
{
pub fn with_n_rows(mut self, num_rows: Option<usize>) -> Self {
self.n_rows = num_rows;
self
}
pub fn with_schema(mut self, schema: &'a Schema) -> Self {
self.schema = Some(schema);
self
}
pub fn with_rechunk(mut self, rechunk: bool) -> Self {
self.rechunk = rechunk;
self
}
pub fn infer_schema_len(mut self, infer_schema_len: Option<usize>) -> Self {
self.infer_schema_len = infer_schema_len;
self
}
pub fn with_n_threads(mut self, n: Option<usize>) -> Self {
self.n_threads = n;
self
}
pub fn with_path<P: Into<PathBuf>>(mut self, path: Option<P>) -> Self {
self.path = path.map(|p| p.into());
self
}
pub fn with_chunk_size(mut self, chunk_size: usize) -> Self {
self.chunk_size = chunk_size;
self
}
pub fn low_memory(mut self, toggle: bool) -> Self {
self.low_memory = toggle;
self
}
}
impl<'a> JsonLineReader<'a, File> {
pub fn from_path<P: Into<PathBuf>>(path: P) -> Result<Self> {
let path = resolve_homedir(&path.into());
let f = std::fs::File::open(&path)?;
Ok(Self::new(f).with_path(Some(path)))
}
}
impl<'a, R> SerReader<R> for JsonLineReader<'a, R>
where
R: MmapBytesReader,
{
fn new(reader: R) -> Self {
JsonLineReader {
reader,
rechunk: true,
n_rows: None,
n_threads: None,
infer_schema_len: Some(128),
schema: None,
path: None,
chunk_size: 1 << 18,
low_memory: false,
}
}
fn finish(mut self) -> Result<DataFrame> {
let rechunk = self.rechunk;
let reader_bytes = get_reader_bytes(&mut self.reader)?;
let mut json_reader = CoreJsonReader::new(
reader_bytes,
self.n_rows,
self.schema,
self.n_threads,
1024,
self.chunk_size,
self.low_memory,
self.infer_schema_len,
)?;
let mut df: DataFrame = json_reader.as_df()?;
if rechunk && df.n_chunks()? > 1 {
df.as_single_chunk_par();
}
Ok(df)
}
}
pub(crate) struct CoreJsonReader<'a> {
reader_bytes: Option<ReaderBytes<'a>>,
n_rows: Option<usize>,
schema: Cow<'a, Schema>,
n_threads: Option<usize>,
sample_size: usize,
chunk_size: usize,
low_memory: bool,
}
impl<'a> CoreJsonReader<'a> {
#[allow(clippy::too_many_arguments)]
pub(crate) fn new(
reader_bytes: ReaderBytes<'a>,
n_rows: Option<usize>,
schema: Option<&'a Schema>,
n_threads: Option<usize>,
sample_size: usize,
chunk_size: usize,
low_memory: bool,
infer_schema_len: Option<usize>,
) -> Result<CoreJsonReader<'a>> {
let reader_bytes = reader_bytes;
let schema = match schema {
Some(schema) => Cow::Borrowed(schema),
None => {
let bytes: &[u8] = &reader_bytes;
let mut cursor = Cursor::new(bytes);
let data_type = ndjson::read::infer(&mut cursor, infer_schema_len).unwrap();
let schema: polars_core::prelude::Schema =
StructArray::get_fields(&data_type).into();
Cow::Owned(schema)
}
};
Ok(CoreJsonReader {
reader_bytes: Some(reader_bytes),
schema,
sample_size,
n_rows,
n_threads,
chunk_size,
low_memory,
})
}
fn parse_json(&mut self, mut n_threads: usize, bytes: &[u8]) -> Result<DataFrame> {
let mut total_rows = 128;
if let Some((mean, std)) = get_line_stats(bytes, self.sample_size) {
total_rows = (bytes.len() as f32 / (mean - 0.01 * std)) as usize;
}
if total_rows == 128 {
n_threads = 1;
}
let rows_per_thread = total_rows / n_threads;
let max_proxy = bytes.len() / n_threads / 2;
let capacity = if self.low_memory {
self.chunk_size
} else {
std::cmp::min(rows_per_thread, max_proxy)
};
let expected_fields = &self.schema.len();
let file_chunks =
get_file_chunks(bytes, n_threads, *expected_fields, SEP, Some(QUOTE_CHAR));
let dfs = POOL.install(|| {
file_chunks
.into_par_iter()
.map(|(bytes_offset_thread, stop_at_nbytes)| {
let mut read = bytes_offset_thread;
let mut last_read = usize::MAX;
let mut buffers = init_buffers(&self.schema, capacity)?;
loop {
if read >= stop_at_nbytes || read == last_read {
break;
}
let local_bytes = &bytes[read..stop_at_nbytes];
last_read = read;
read += parse_lines(local_bytes, &mut buffers)?;
}
DataFrame::new(
buffers
.into_values()
.map(|buf| buf.into_series())
.collect::<Result<_>>()?,
)
})
.collect::<Result<Vec<_>>>()
})?;
accumulate_dataframes_vertical(dfs)
}
pub fn as_df(&mut self) -> Result<DataFrame> {
let n_threads = self.n_threads.unwrap_or_else(|| POOL.current_num_threads());
let reader_bytes = self.reader_bytes.take().unwrap();
let mut df = self.parse_json(n_threads, &reader_bytes)?;
if let Some(n_rows) = self.n_rows {
if n_rows < df.height() {
df = df.slice(0, n_rows)
}
}
Ok(df)
}
}
fn parse_lines(bytes: &[u8], buffers: &mut PlHashMap<String, Buffer>) -> Result<usize> {
let mut stream = Deserializer::from_slice(bytes).into_iter::<Value>();
for value in stream.by_ref() {
let v = value.unwrap_or(Value::Null);
match v {
Value::Object(value) => {
buffers
.iter_mut()
.for_each(|(s, inner)| match value.get(s) {
Some(v) => {
inner.add(v).expect("inner.add(v)");
}
None => inner.add_null(),
});
}
_ => {
buffers.iter_mut().for_each(|(_, inner)| inner.add_null());
}
};
}
let byte_offset = stream.byte_offset();
Ok(byte_offset)
}