[−][src]Struct phyloprob::StaFeParams

pub struct StaFeParams {
    pub ba_score_mat: SparseFreeEnergyMat,
    pub bpa_score_mat: FreeEnergy4dMat,
    pub exp_ba_score_mat: SparseFreeEnergyMat,
    pub exp_bpa_score_mat: FreeEnergy4dMat,
    pub opening_gap_penalty: FreeEnergy,
    pub extending_gap_penalty: FreeEnergy,
    pub exp_opening_gap_penalty: FreeEnergy,
    pub exp_extending_gap_penalty: FreeEnergy,
    pub is_logsumexp_applied: bool,
    // some fields omitted
}

Fields

ba_score_mat: SparseFreeEnergyMatbpa_score_mat: FreeEnergy4dMatexp_ba_score_mat: SparseFreeEnergyMatexp_bpa_score_mat: FreeEnergy4dMatopening_gap_penalty: FreeEnergyextending_gap_penalty: FreeEnergyexp_opening_gap_penalty: FreeEnergyexp_extending_gap_penalty: FreeEnergyis_logsumexp_applied: bool

Methods

impl StaFeParams[src]

pub fn origin() -> StaFeParams[src]

pub fn new(
    seq_pair: &SeqPair,
    seq_len_pair: &(usize, usize),
    max_bp_span_pair: &PosPair,
    max_gap_num: Pos,
    max_gap_num_4_il: Pos,
    bpp_mat_pair: &ProbMatPair,
    max_free_energy: FreeEnergy,
    opening_gap_penalty: FreeEnergy,
    extending_gap_penalty: FreeEnergy,
    exp_opening_gap_penalty: FreeEnergy,
    exp_extending_gap_penalty: FreeEnergy
) -> StaFeParams[src]

Auto Trait Implementations

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    T: 'static + ?Sized, [src]

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    T: ?Sized, [src]

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impl<T> From<T> for T[src]

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    U: From<T>, [src]

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    U: Into<T>, [src]

type Error = Infallible

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    U: TryFrom<T>, [src]

type Error = <U as TryFrom<T>>::Error

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