Crate phylofold

Modules§

utils

Structs§

EXP_COEFFICIENT_4_ALL_C_HL_DELTA_FE
EXP_COEFFICIENT_4_LOG_EXTRAPOLATION_OF_INIT_HL_DELTA_FE
EXP_COEFFICIENT_4_NINIO
EXP_COEFFICIENT_4_TERM_OF_NUM_OF_BRANCHING_HELICES_ON_INIT_ML_DELTA_FE
EXP_CONST_4_ALL_C_HL_DELTA_FE
EXP_CONST_4_INIT_ML_DELTA_FE
EXP_FIVE_PRIME_DE_DELTA_FES
EXP_HELIX_AU_OR_GU_END_PENALTY_DELTA_FE
EXP_HELIX_INTERMOLECULAR_INIT_DELTA_FE
EXP_HELIX_SYMMETRY_PENALTY_DELTA_FE
EXP_HL_GG_FIRST_MISMATCH_BONUS_DELTA_FE
EXP_HL_OF_3_CS_PENALTY_DELTA_FE
EXP_HL_SPECIAL_GU_CLOSURE_BONUS_DELTA_FE
EXP_HL_TM_DELTA_FES
EXP_HL_UU_OR_GA_FIRST_MISMATCH_BONUS_DELTA_FE
EXP_IL_TM_DELTA_FES
EXP_INIT_HL_DELTA_FES
EXP_MAX_NINIO
EXP_ML_TM_DELTA_FES
EXP_ONE_VS_MANY_IL_TM_DELTA_FES
EXP_RIBOSUM_85_60_BA_SCORE_MAT
EXP_RIBOSUM_85_60_BPA_SCORE_MAT
EXP_SPECIAL_HL_DELTA_FES
EXP_STACK_DELTA_FES
EXP_THREE_PRIME_DE_DELTA_FES
EXP_TWO_VS_3_IL_TM_DELTA_FES
FIVE_PRIME_DE_DELTA_FES
FastaRecord
HL_TM_DELTA_FES
IL_TM_DELTA_FES
INIT_HL_DELTA_FES
ML_TM_DELTA_FES
MeaSs
ONE_VS_MANY_IL_TM_DELTA_FES
Options: A description of the options that a program can handle.
Pool: A threadpool that acts as a handle to a number of threads spawned at construction.
RIBOSUM_85_60_BA_SCORE_MAT
RIBOSUM_85_60_BPA_SCORE_MAT
SPECIAL_HL_DELTA_FES
STACK_DELTA_FES
SaScoringParams
SsFreeEnergyMats
SsMaxFreeEnergyMats
SsPartFuncMats
StaFeParams
StaInsidePartFuncMatSets
StaInsidePartFuncMats
THREE_PRIME_DE_DELTA_FES
TWO_VS_3_IL_TM_DELTA_FES
TmpStaInsidePartFuncMatSets

Constants§

Functions§

convert
from_utf8_unchecked^⚠: Converts a slice of bytes to a string slice without checking that the string contains valid UTF-8.
get_2_loop_fe
get_abs_diff
get_backward_tmp_sta_inside_part_func_mat_sets
get_bpp_and_unpair_prob_mats
get_exp_2_loop_fe
get_exp_hl_fe
get_exp_special_hl_fe
get_forward_tmp_sta_inside_part_func_mat_sets
get_hl_fe
get_max_bp_span
get_max_free_energy
get_seq_len_diff
get_special_hl_fe
get_ss_part_func_mats
get_sta_inside_part_func_mat_sets
get_sta_outside_part_func_4d_mat_4_bpas
invert_bp
io_algo_4_bpap_mat
is_au_or_gu
is_canonical
is_rna_base
logsumexp
max: Compares and returns the maximum of two values.
mccaskill_algo
min: Compares and returns the minimum of two values.
multizip: An iterator that generalizes .zip() and allows running multiple iterators in lockstep.
pct_of_bpp_and_upp_mat
phylofold
phyloprob
print_program_usage
remove_small_bpps_from_bpp_mat
scale

Type Aliases§