Module metrics 

Quantitative metrics for proving biological computing model correctness.

Computes four categories of proof metrics from colony state:

• Transfer Effect: vocabulary sharing across agents
• Dissolution Effect: boundary modulation reinforces knowledge
• Graph Richness: structural complexity of the knowledge graph
• Vocabulary Spread: how well knowledge propagates

Structs

ColonyMetrics

All colony metrics combined.

DissolutionMetrics

Dissolution effect metrics — proves boundary modulation reinforces knowledge.

GraphRichnessMetrics

Graph richness metrics — proves colony builds meaningful structure.

TransferMetrics

Transfer effect metrics — proves vocabulary sharing works.

VocabularySpreadMetrics

Vocabulary spread metrics — proves knowledge propagates across agents.

Functions

compute

Compute all proof metrics from the colony’s current state and history.

compute_from_snapshots

Compute metrics from snapshots (for use when agents may be dead).

print_report

Print a formatted metrics report to the terminal.