Crate phago_runtime 

Phago Runtime

Colony management, scheduling, and host runtime.

The runtime is the “organism” — it manages the lifecycle of agents (cells), runs the tick-based simulation, and maintains the substrate (shared environment).

Quick Start

use phago_runtime::prelude::*;

// Create a colony
let mut colony = Colony::new();

// Ingest a document
colony.ingest_document("title", "content", Position::new(0.0, 0.0));

// Spawn a digester
colony.spawn(Box::new(Digester::new(Position::new(0.0, 0.0))));

// Run the simulation
colony.run(50);

Modules

backend

Graph backend configuration and factory.

bench

Benchmark harness for running and comparing colony simulations.

colony

Colony — agent lifecycle management.

colony_builder

Colony builder with configurable persistence.

community

Community detection via label propagation.

corpus

Corpus loader — replaces hard-coded documents in POC.

curriculum

Curriculum ordering for training data.

export

Triple exporter — extract knowledge graph triples with Hebbian weights.

metrics

Quantitative metrics for proving biological computing model correctness.

prelude

Phago Runtime Prelude — convenient imports for common usage.

project_context

Project context — file tree awareness for code indexing.

session

Session persistence — save/load colony graph and agent state.

substrate_impl

Concrete implementation of the Substrate trait.

topology_impl

Concrete implementation of the TopologyGraph trait using petgraph.

training_format

Training data format generators.