Crate phago_core 

Phago Core

Core traits and types for Phago biological computing primitives.

This crate defines the ten biological primitives as Rust traits, along with shared types used across the entire framework:

• DIGEST — Consume input, extract fragments, present learnings (phagocytosis)
• APOPTOSE — Self-assess integrity, gracefully self-terminate (programmed cell death)
• SENSE — Detect environmental signals, follow gradients (chemotaxis)
• TRANSFER — Export/import capabilities across agents (horizontal gene transfer)
• EMERGE — Detect quorum, activate collective behaviors (phase transitions)
• WIRE — Strengthen used connections, prune unused ones (Hebbian learning)
• SYMBIOSE — Integrate another agent instead of consuming it (endosymbiosis)
• STIGMERGE — Coordinate through environmental modification (stigmergy)
• NEGATE — Define identity by exclusion, detect anomalies (negative selection)
• DISSOLVE — Modulate agent-substrate boundaries (holobiont)

Quick Start

use phago_core::prelude::*;

// Create a position
let pos = Position::new(0.0, 0.0);

// Create a deterministic agent ID (for testing)
let id = AgentId::from_seed(42);

Modules

agent

Agent — the fundamental computational cell.

error

Error types for Phago operations.

louvain

Louvain community detection algorithm implementation.

prelude

Phago Core Prelude — convenient imports for common usage.

primitives

The ten biological computing primitives.

semantic

Semantic similarity utilities for vector embeddings.

signal

Signal utilities — helpers for working with signals and gradients.

substrate

Substrate — the shared environment all agents operate within.

topology

Topology — the knowledge graph structure.

types

Shared types used across all Phago primitives and crates.