Crate patoz

Patoz is a strict, type safe PDB file parser. Converts text PDB file into a traversable record struct.

Modules

author

Contains parsers related to Author records. The AUTHOR record contains the names of the people responsible for the contents of the entry.

caveat

Contains parsers related to Caveat records. CAVEAT warns of errors and unresolved issues in the entry. Use caution when using an entry containing this record.

compnd

Contains parsers related to Compnd records. The COMPND record describes the macromolecular contents of an entry. Also contains tokens parsers which are utilized from other records such as SOURCE records

expdta

Contains parsers related to Expdta records.

header

Contains parsers related to Header records. Header record gives information about identity of this pdb file.

jrnl

Contains parsers related to Jrnl records.

keywds

Contains parsers related to Keywds records. The KEYWDS record contains a set of terms relevant to the entry.

mdltyp

Contains parsers related to Mdltyp records.

nummdl

Contains parsers related to Nummdl records Nummdl record is a single line record having number of models inside the pdb entry. There is only one record per pdb.

obslte

Contains parsers related to Obslte records. Obslte record indicates that this entry is removed from PDB and replaced with another entry.

primitive

contains lowest level parsers that are used by multiple record parsers

revdat

Contains parsers related to Revdat records.

seqres

source

Contains parsers related to Source records. The SOURCE record specifies the biological or chemical source of each molecule in this entry..

split

Contains parsers related to Split records. The SPLIT record is used in instances where a specific entry composes part of a large macromolecular complex. It will identify the PDB entries that are required to reconstitute a complete complex.

sprsde

Contains parsers related to Sprsde records. The SPRSDE records contain a list of the ID codes of entries that were made obsolete by the given coordinate entry and removed from the PDB release set.

title

Contains parsers related to Title records.The TITLE record contains a title for the experiment or analysis that is represented in the entry.

Macros

make_line_folder

make_token_parser

make_token_tagger

Structs

Author

Holds name of an author utilized by multiple parsers such as author and journal author parsers

Authors

author collection

Caveat

fallacies of this entry

Cmpnd

collection of tokens in a CMPND record

Experimental

experimanetal techniques used for exploring structure of this entry

Header

contains HEADER recor information

JournalAuthors

journal author collection

JournalCitation

journal Citation fields

JournalDoi

digital object identifier of related e-pub

JournalEditors

journal editor collection

JournalPubMedId

journal PubMed id

JournalPublication

journal publication fields

JournalReference

journal reference

JournalTitle

journal title

Keywds

keywords related to the entry

Mdltyp

model type of the entry

Nummdl

number of models in this file

Obslte

contains pdb entry ids which removed this one from PDB

PdbFile

PdbHeader

PdbJournal

Revdat

Represents a modification made to this pdb entry.

Revdats

collection of revisions

Seqres

Source

collection of tokens in a SOURCE record

Split

if this entry is a part of bigger structure, this struct holds ids of other parts of the bigger structure

Sprsde

pdb entry ids made obsolete by this entry

Title

result of a TITLE record

Enums

ExperimentalTechnique

Experimental techniques utilized in obtaining structure data

ModificationType

modification type of REVDAT record

Record

main enum unifying all record parser results. all sub parsers return a cariant of this

SerialNumber

Serial Number Type of a JRNL REFN record

Token

Represents keys of CMPND and SOURCE records

Traits

ToPdbFile

Functions

parse

main parse function

Type Aliases

IResult

Holds the result of parsing functions