[−][src]Crate patoz
Patoz is a strict, type safe PDB file parser. Converts text PDB file into a traversable record struct.
Modules
| author | Contains parsers related to Author records. The AUTHOR record contains the names of the people responsible for the contents of the entry. |
| caveat | Contains parsers related to Caveat records. CAVEAT warns of errors and unresolved issues in the entry. Use caution when using an entry containing this record. |
| compnd | Contains parsers related to Compnd records. The COMPND record describes the macromolecular contents of an entry. Also contains tokens parsers which are utilized from other records such as SOURCE records |
| expdta | Contains parsers related to Expdta records. |
| header | Contains parsers related to Header records. Header record gives information about identity of this pdb file. |
| jrnl | Contains parsers related to Jrnl records. |
| keywds | Contains parsers related to Keywds records. The KEYWDS record contains a set of terms relevant to the entry. |
| mdltyp | Contains parsers related to Mdltyp records. |
| nummdl | Contains parsers related to Nummdl records Nummdl record is a single line record having number of models inside the pdb entry. There is only one record per pdb. |
| obslte | Contains parsers related to Obslte records. Obslte record indicates that this entry is removed from PDB and replaced with another entry. |
| primitive | contains lowest level parsers that are used by multiple record parsers |
| revdat | Contains parsers related to Revdat records. |
| seqres | |
| source | Contains parsers related to Source records. The SOURCE record specifies the biological or chemical source of each molecule in this entry.. |
| split | Contains parsers related to Split records. The SPLIT record is used in instances where a specific entry composes part of a large macromolecular complex. It will identify the PDB entries that are required to reconstitute a complete complex. |
| sprsde | Contains parsers related to Sprsde records. The SPRSDE records contain a list of the ID codes of entries that were made obsolete by the given coordinate entry and removed from the PDB release set. |
| title | Contains parsers related to Title records.The TITLE record contains a title for the experiment or analysis that is represented in the entry. |
Macros
| make_line_folder | |
| make_token_parser | |
| make_token_tagger |
Structs
| Author | Holds name of an author utilized by multiple parsers such as author and journal author parsers |
| Authors | author collection |
| Caveat | fallacies of this entry |
| Cmpnd | collection of tokens in a CMPND record |
| Experimental | experimanetal techniques used for exploring structure of this entry |
| Header | contains HEADER recor information |
| JournalAuthors | journal author collection |
| JournalCitation | journal Citation fields |
| JournalDoi | digital object identifier of related e-pub |
| JournalEditors | journal editor collection |
| JournalPubMedId | journal PubMed id |
| JournalPublication | journal publication fields |
| JournalReference | journal reference |
| JournalTitle | journal title |
| Keywds | keywords related to the entry |
| Mdltyp | model type of the entry |
| Nummdl | number of models in this file |
| Obslte | contains pdb entry ids which removed this one from PDB |
| PdbFile | |
| PdbHeader | |
| PdbJournal | |
| Revdat | Represents a modification made to this pdb entry. |
| Revdats | collection of revisions |
| Seqres | |
| Source | collection of tokens in a SOURCE record |
| Split | if this entry is a part of bigger structure, this struct holds ids of other parts of the bigger structure |
| Sprsde | pdb entry ids made obsolete by this entry |
| Title | result of a TITLE record |
Enums
| ExperimentalTechnique | Experimental techniques utilized in obtaining structure data |
| ModificationType | modification type of REVDAT record |
| Record | main enum unifying all record parser results. all sub parsers return a cariant of this |
| SerialNumber | Serial Number Type of a JRNL REFN record |
| Token | Represents keys of CMPND and SOURCE records |
Traits
| ToPdbFile |
Functions
| parse | main parse function |
Type Definitions
| IResult | Holds the result of parsing functions |