Crate paf 

The paf crate parses PAF files. PAF is a Pairwise mApping Format which is commonly used to represent the mapping between two sets of sequences. This crate is based on output produced from minimap2, so please see the documentation of minimap2 to see the full set of fields that can be present in a PAF file.

Example

use paf::Reader;
use std::env;

fn main() {
    let data = env::args().skip(1).next();

    if let Some(filename) = data {
        let mut reader = Reader::from_path(&filename).unwrap();
        for record in reader.records() {
            let record = record.unwrap();
            println!("{:?}", record);
        }
    } else {
        eprintln!("Usage: print_paf <filename>");
        std::process::exit(1);
    }
}

Structs

Error

An error type for this crate.

PafRecord

Struct representing a PAF record.

Reader

Struct representing a PAF parser iterator.

RecordsIntoIter

An owned iterator over the records of a PAF file.

RecordsIter

A borrowed iterator over the records of a PAF file.

Writer

Struct representing a PAF file writer.

Enums

ErrorKind

Specific errors that can happen.

Tag

Enum representing the possible types of tags.

Type

Enum representing the possible types of optional fields.

Type Aliases

Result

A type alias for Result<T, paf::Error>.