Crate pa_types 

Re-exports

pub use cigar::*;

pub use cost::*;

Modules

cigar

cost

Structs

LexPos

A small wrapper around Pos that implements Ord for lexicographic ordering.

Pos

A position in a pairwise matching.

Traits

Aligner

Generic global pairwise alignment interface.

Functions

seq_to_string

Convert seq to a String.

Type Aliases

Base

A single base

I

A 0-based index into a sequence.

Path

The path corresponding to an alignment of two sequences.

Seq

A non-owning sequence

Sequence

A sequence