oxiphysics_io/
lib.rs

1// Copyright 2026 COOLJAPAN OU (Team KitaSan)
2// SPDX-License-Identifier: Apache-2.0
3
4//! File I/O and serialization for the OxiPhysics engine.
5//!
6//! Provides writers (and basic readers) for common physics simulation formats:
7//! - VTK Legacy (.vtk) and VTU (.vtu) for visualization in ParaView
8//! - PDB for molecular data
9//! - LAMMPS dump for trajectory data
10//! - Wavefront OBJ for triangle meshes
11//! - CSV for time series data
12//! - XDMF for particle/mesh visualization in ParaView/VisIt
13//! - Trajectory for accumulating and writing animation frames
14//! - GROMACS GRO format for molecular simulation snapshots
15
16mod error;
17pub use error::*;
18
19pub mod amber;
20pub mod binary_format;
21pub mod csv;
22pub mod csv_io;
23pub mod exodus;
24pub mod experimental_data_io;
25pub mod foam_io;
26pub mod gltf;
27pub mod gromacs;
28pub mod hdf5_simple;
29pub mod json_io;
30pub mod lammps;
31pub mod lammps_dump;
32pub mod mesh_quality;
33pub mod netcdf;
34pub mod numpy;
35pub mod obj;
36pub mod openfoam;
37pub mod pdb;
38pub mod stl;
39pub mod trajectory;
40pub mod vtk;
41pub mod vtk_writer;
42pub mod vtu;
43pub mod xdmf;
44pub mod xtc_dcd;
45
46pub use binary_format::*;
47pub use csv::{CsvReader, CsvWriter};
48pub use foam_io::*;
49pub use gromacs::{GroAtom, GroFile};
50pub use lammps::{LammpsAtom, LammpsDumpReader, LammpsDumpWriter};
51pub use lammps_dump::{
52    LammpsDumpFrame, LammpsDumpReader as LammpsDumpFrameReader,
53    LammpsDumpWriter as LammpsDumpFrameWriter,
54};
55pub use obj::{ObjReader, ObjWriter};
56pub use pdb::{PdbAtom, PdbReader, PdbWriter};
57pub use trajectory::TrajectoryWriter;
58pub use vtk::{VtkCellType, VtkDataArray, VtkWriter, VtuGrid};
59pub use vtk_writer::*;
60pub use vtu::VtuWriter;
61pub use xdmf::{write_xdmf_particles, write_xdmf_temporal};
62
63/// Trait for physics data I/O.
64pub trait PhysicsIo {
65    /// Initialize this component.
66    fn init(&mut self);
67}
68pub mod abaqus_format;
69pub mod ambermd_io;
70pub mod amr_io;
71pub mod animation_io;
72pub mod binary_formats;
73pub mod binary_io;
74pub mod cad_io;
75pub mod calculix_format;
76pub mod cgns_format;
77pub mod checkpoint_io;
78pub mod crystallography_io;
79pub mod database_io;
80pub mod ensight_format;
81pub mod exodus_format;
82pub mod finite_element_io;
83pub mod fluent_format;
84pub mod geospatial_io;
85pub mod gmsh_format;
86pub mod hdf5_io;
87pub mod hpc_io;
88pub mod lattice_io;
89pub mod machine_learning_io;
90pub mod material_db;
91pub mod material_db_io;
92pub mod medical_imaging;
93pub mod medical_imaging_io;
94pub mod medical_io;
95pub mod mesh_export;
96pub mod mesh_io;
97pub mod molecular_docking_io;
98pub mod molecular_visualization_io;
99pub mod molecular_viz_io;
100pub mod openfoam_format;
101pub mod parallel_io;
102pub mod particle_data_io;
103pub mod particle_formats;
104pub use particle_formats::{
105    BinaryFrameReader, BinaryFrameWriter, DcdHeader, DcdReader, DcdWriter, GroReader, GroWriter,
106    ParticleFrame, ParticleTrajectory, TrajectoryStats, XyzReader, XyzWriter,
107};
108pub mod physics_binary;
109pub mod plot3d_format;
110pub mod point_cloud_io;
111pub mod quantum_chemistry_io;
112pub mod remote_sensing_io;
113pub mod restart_io;
114pub mod robotics_io;
115pub mod scientific_formats;
116pub mod seismic_io;
117pub mod sensor_data_io;
118pub mod sensor_io;
119pub mod simulation_database;
120pub mod simulation_io;
121pub mod simulation_log;
122pub mod simulation_report_io;
123pub mod spectroscopy_io;
124pub mod streaming_io;
125pub mod su2_format;
126pub mod tecplot_format;
127pub mod time_series_io;
128pub mod visualization_io;
129pub mod wavefront_extended;
130pub mod weather_data_io;
131pub mod weather_io;
132pub mod xarray_io;
oxiphysics_io/lib.rs

oxiphysics_io/
lib.rs
