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oxicuda_seq/alignment/
mod.rs

1//! Sequence-alignment algorithms.
2
3pub mod banded;
4pub mod blast;
5pub mod gotoh;
6pub mod hirschberg;
7pub mod needleman_wunsch;
8pub mod smith_waterman;
9
10pub use banded::banded_align;
11pub use blast::{BlastAligner, BlastConfig, Hsp};
12pub use gotoh::{GotohScoring, gotoh_align};
13pub use hirschberg::hirschberg_align;
14pub use needleman_wunsch::{Alignment, ScoringMatrix, needleman_wunsch};
15pub use smith_waterman::smith_waterman;
16
17/// Re-export the local alignment trace direction used by SW.
18pub use smith_waterman::LocalAlignment;