List of all items

Structs

• align::wfa::WfaAlignment
• alignment::blast::BlastAligner
• alignment::blast::BlastConfig
• alignment::blast::Hsp
• alignment::gotoh::GotohAlignment
• alignment::gotoh::GotohScoring
• alignment::hirschberg::HirschbergAlignment
• alignment::needleman_wunsch::Alignment
• alignment::needleman_wunsch::ScoringMatrix
• alignment::smith_waterman::LocalAlignment
• beam::beam::BeamConfig
• beam::beam::BeamSearch
• beam::diverse::DiverseBeam
• beam::diverse::DiverseBeamConfig
• beam::length_penalty::LengthPenalty
• beam::length_penalty::LengthPenaltyConfig
• crf::crf_train::LbfgsConfig
• crf::general_graph::Edge
• crf::general_graph::GeneralGraphCrf
• crf::general_graph::GraphCrfConfig
• crf::lbfgs_b::LbfgsB
• crf::lbfgs_b::LbfgsBConfig
• crf::lbfgs_b::LbfgsBResult
• crf::linear_chain_crf::LinearChainCrf
• crf::neural_crf::NeuralCrf
• crf::neural_crf::NeuralCrfForward
• crf::neural_crf::NeuralCrfGrad
• crf::sgd::CrfSgd
• crf::sgd::CrfSgdConfig
• crf::skip_chain::SkipChainConfig
• crf::skip_chain::SkipChainCrf
• ctc::ctc_decode::CtcHypothesis
• decoders::contrastive::ContrastiveConfig
• decoders::contrastive::ContrastiveSearcher
• decoders::nucleus::NucleusConfig
• decoders::pointer_network::PointerGrad
• decoders::pointer_network::PointerNetwork
• decoders::top_k::TopKConfig
• decoders::typical::TypicalConfig
• folding::nussinov::NussinovConfig
• folding::nussinov::NussinovResult
• grid_crf::grid_crf::GridCrf
• grid_crf::loopy_bp::LoopyBp
• grid_crf::loopy_bp::LoopyBpConfig
• grid_crf::loopy_bp::LoopyBpResult
• grid_crf::mean_field::MeanFieldConfig
• handle::LcgRng
• handle::SeqHandle
• handle::SmVersion
• hmm::baum_welch::BaumWelchGaussianResult
• hmm::baum_welch::BaumWelchResult
• hmm::forward_backward::ForwardBackward
• hmm::hmm::HmmDiscrete
• hmm::hmm::HmmGaussian
• hmm::posterior_decoding::PosteriorDecode
• hmm::scaling::ScaledBackwardResult
• hmm::scaling::ScaledForwardBackwardResult
• hmm::scaling::ScaledForwardResult
• hmm::semimarkov::HsmConfig
• hmm::semimarkov::HsmResult
• hmm::semimarkov::Hsmm
• hmm::variational::VbHmmConfig
• hmm::variational::VbHmmResult
• hmm::viterbi::ViterbiResult
• kalman::ekf::ExtendedKalmanFilter
• kalman::ekf::ExtendedKalmanResult
• kalman::kalman_em::KalmanEmConfig
• kalman::kalman_filter::KalmanFilter
• kalman::kalman_filter::KalmanResult
• kalman::particle::ParticleConfig
• kalman::particle::ParticleFilter
• kalman::particle::ParticleResult
• kalman::rts_smoother::RtsResult
• kalman::ukf::UkfParams
• kalman::ukf::UkfResult
• kalman::ukf::UnscentedKalmanFilter
• matching::aho_corasick::AhoCorasick
• matching::aho_corasick::Match
• memm::memm::Memm
• metrics::bertscore::BertScore
• metrics::bertscore::BertScoreConfig
• metrics::edit_distance::EditAlignment
• metrics::edit_distance::EditCounts
• metrics::ter::TerResult
• mrf::belief_prop::BpConfig
• mrf::belief_prop::BpResult
• mrf::gibbs::GibbsConfig
• mrf::junction_tree::Clique
• mrf::junction_tree::JunctionTree
• mrf::junction_tree::JunctionTreeConfig
• mrf::mrf::IsingModel
• mrf::mrf::Mrf
• mrf::swendsen_wang::SwendsenWang
• mrf::swendsen_wang::SwendsenWangConfig
• mrf::wolff::Wolff
• mrf::wolff::WolffConfig
• perceptron::structured_perceptron::PerceptronConfig
• perceptron::structured_perceptron::PerceptronExample
• perceptron::structured_perceptron::PerceptronTrainResult
• perceptron::structured_perceptron::StructuredPerceptron
• ssvm::cutting_plane::CuttingPlaneConfig
• ssvm::cutting_plane_full::FullCuttingPlaneConfig
• ssvm::cutting_plane_full::FullCuttingPlaneResult
• ssvm::cutting_plane_full::FullCuttingPlaneSvm
• ssvm::ssvm::StructuredSvm
• string::fm_index::FmIndex
• string::manacher::Manacher
• string::suffix_array::SuffixArray
• string::suffix_automaton::SuffixAutomaton
• structured::sinkhorn_crf::SinkhornConfig
• structured::sinkhorn_crf::SinkhornCrf
• structured::sinkhorn_crf::SinkhornResult
• tagging::bioes::Span
• tagging::span_f1::PrfScore
• tagging::span_f1::SpanF1Report

Enums

• align::wfa::WfaOp
• error::SeqError
• hmm::semimarkov::DurationDistrib
• metrics::edit_distance::EditOp
• tagging::bioes::Tag

Functions

• align::wfa::wfa_align
• alignment::banded::banded_align
• alignment::gotoh::gotoh_align
• alignment::hirschberg::hirschberg_align
• alignment::needleman_wunsch::needleman_wunsch
• alignment::smith_waterman::smith_waterman
• crf::crf_train::crf_log_likelihood_and_gradient
• crf::crf_train::train_crf_lbfgs
• crf::viterbi_decode::viterbi_decode
• ctc::ctc_decode::ctc_greedy_decode
• ctc::ctc_decode::ctc_prefix_beam_search
• ctc::ctc_loss::ctc_log_occupancy
• ctc::ctc_loss::ctc_loss
• ctc::ctc_loss::ctc_loss_batch
• decoders::nucleus::nucleus_sample
• decoders::nucleus::nucleus_sample_batch
• decoders::top_k::top_k_sample
• decoders::top_k::top_k_sample_batch
• decoders::typical::entropy
• decoders::typical::typical_sample
• decoders::typical::typical_sample_batch
• distance::myers_bitvector::myers_distance_str
• distance::myers_bitvector::myers_edit_distance
• distance::myers_bitvector::myers_edit_distance_checked
• folding::nussinov::can_pair
• folding::nussinov::nussinov_fold
• grid_crf::mean_field::mean_field_inference
• hmm::baum_welch::baum_welch_discrete
• hmm::baum_welch::baum_welch_gaussian
• hmm::forward_backward::forward_backward
• hmm::forward_backward::forward_backward_gaussian
• hmm::forward_backward::logsumexp
• hmm::hmm::log_safe
• hmm::posterior_decoding::posterior_decode
• hmm::posterior_decoding::posterior_path_is_feasible
• hmm::scaling::scaled_backward
• hmm::scaling::scaled_baum_welch_step
• hmm::scaling::scaled_forward
• hmm::scaling::scaled_forward_backward
• hmm::scaling::scaled_viterbi
• hmm::semimarkov::hsm_fit
• hmm::variational::digamma
• hmm::variational::dirichlet_log_normalizer
• hmm::variational::log_gamma
• hmm::variational::variational_hmm
• hmm::viterbi::viterbi
• kalman::kalman_em::kalman_em
• kalman::linalg::add
• kalman::linalg::cholesky
• kalman::linalg::determinant
• kalman::linalg::eye
• kalman::linalg::inverse
• kalman::linalg::matmul
• kalman::linalg::matmul_rect
• kalman::linalg::matvec
• kalman::linalg::matvec_rect
• kalman::linalg::sub
• kalman::linalg::transpose
• kalman::linalg::transpose_rect
• kalman::rts_smoother::rts_smoother
• metrics::bertscore::bert_score
• metrics::bertscore::bert_score_idf
• metrics::bertscore::corpus_idf
• metrics::chrf::char_ngram_counts
• metrics::chrf::chrf_plus_plus
• metrics::chrf::chrf_score
• metrics::chrf::corpus_chrf
• metrics::chrf::corpus_chrf_plus_plus
• metrics::chrf::f_beta
• metrics::chrf::ngram_intersection
• metrics::chrf::word_ngram_counts
• metrics::edit_distance::align
• metrics::edit_distance::character_error_rate
• metrics::edit_distance::edit_distance_aligned
• metrics::edit_distance::word_error_rate
• metrics::metrics::bleu_n
• metrics::metrics::edit_distance
• metrics::metrics::log_loss
• metrics::metrics::perplexity
• metrics::metrics::sequence_accuracy
• metrics::metrics::token_accuracy
• metrics::ter::ter
• metrics::ter::ter_ids
• mrf::belief_prop::loopy_bp_map
• mrf::belief_prop::loopy_bp_marginals
• mrf::gibbs::ising_gibbs
• perceptron::structured_perceptron::train_perceptron
• ptx_kernels::beam_topk_ptx
• ptx_kernels::crf_features_ptx
• ptx_kernels::edit_dist_ptx
• ptx_kernels::forward_pass_ptx
• ptx_kernels::kalman_predict_ptx
• ptx_kernels::mrf_gibbs_ptx
• ptx_kernels::viterbi_step_ptx
• string::manacher::longest_palindrome_str
• string::manacher::manacher
• string::suffix_automaton::longest_common_substring
• string::z_algorithm::z_array
• string::z_algorithm::z_search
• structured::sinkhorn_crf::sinkhorn_normalize
• structured::sinkhorn_crf::sinkhorn_normalize_with_margins
• tagging::bioes::bio_to_bioes
• tagging::bioes::bioes_to_bio
• tagging::bioes::extract_spans
• tagging::bioes::parse_tags
• tagging::bioes::validate_bio
• tagging::bioes::validate_bioes
• tagging::span_f1::span_f1
• tagging::span_f1::span_f1_from_spans

Type Aliases

• error::SeqResult