Module alignment 

Sequence-alignment algorithms.

Re-exports

pub use banded::banded_align;

pub use blast::BlastAligner;

pub use blast::BlastConfig;

pub use blast::Hsp;

pub use gotoh::GotohScoring;

pub use gotoh::gotoh_align;

pub use hirschberg::hirschberg_align;

pub use needleman_wunsch::Alignment;

pub use needleman_wunsch::ScoringMatrix;

pub use needleman_wunsch::needleman_wunsch;

pub use smith_waterman::smith_waterman;

pub use smith_waterman::LocalAlignment;

Modules

banded

Banded global (Needleman–Wunsch) alignment.

blast

BLAST-style seed-and-extend local alignment.

gotoh

Gotoh affine-gap global alignment (3 DP matrices: match M, gap-in-x X, gap-in-y Y).

hirschberg

Hirschberg’s O(min(m, n)) memory global alignment.

needleman_wunsch

Needleman-Wunsch global alignment with a simple linear-gap penalty.

smith_waterman

Smith-Waterman local alignment.